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TranscriptomicsThe human mitochondrial transcriptome
The human mitochondrial genome comprises a distinct genetic system transcribed as precursor polycistronic transcripts that are subsequently cleaved to generate individual mRNAs, tRNAs and rRNAs. Here we provide a comprehensive analysis of the human mitochondrial transcriptome across multiple cell li...
ORGANISM(S): Homo sapiens 
2011-07-20 | E-GEOD-30772 | biostudies-arrayexpress
TranscriptomicsNuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans
We have recently shown that transcription initiation RNAs (tiRNAs) are derived from sequences downstream of transcription start sites. Here we report the identification of a second class of nuclear-specific ~17-18 nucleotide small RNA whose 3M-bM-^@M-^Y ends map precisely to the splice donor site of...
ORGANISM(S): Homo sapiens 
2010-07-01 | E-GEOD-20664 | biostudies-arrayexpress
TranscriptomicsNext Generation Sequencing Analysis of Saccharopolyspora erytharea transcriptomes
We report the high-throughput profiling of saccharopolyspora erythraea life cycle in bioreactors. RNA was harvested at seven time-points from bioreactors, three points immediately before, one during and three following the metabolic switch (as evidenced by biomass cell dry weight). We prepared unstr...
ORGANISM(S): Saccharopolyspora erythraea 
2013-06-18 | E-GEOD-39722 | biostudies-arrayexpress
TranscriptomicsRNA Capture-Seq resolves the deep complexity of the human transcriptome (454)
Transcriptomic analyses have revealed an unexpected complexity of the human transcriptome, whose breadth and depth exceeds current RNA sequencing capacity 1-3. Here we combine tiling arrays and RNA sequencing technologies, in an approach we term RNA Capture-Seq, to enable the assembly and characteri...
ORGANISM(S): Homo sapiens 
2011-09-12 | E-GEOD-29040 | biostudies-arrayexpress
UnknownDNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.
Not available
S-EPMC4405174 | biostudies-literature
TranscriptomicsRNA profiling in mouse haemopoiesis
RNA profiling of mouse haemopoetic lineages RNA profiling of mouse haemopoetic lineages. For the isolation and sequencing of ouse granulocyte nuclei, bone marrow from C57BL/6J was harvested from the femur, tibia and spine using a mortar and pestle in PBS supplemented with 2% (v/v) FCS and mature gra...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-20683 | biostudies-arrayexpress
UnknownExtracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.
Not available
S-EPMC4578249 | biostudies-literature
GenomicsDNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Richard Sandstrom mailto:sull@u.washington.edu). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This tra...
ORGANISM(S): Homo sapiens 
2010-12-29 | E-GEOD-26328 | biostudies-arrayexpress
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