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MetabolomicsComprehensive lipid analysis of green Arabica coffee beans by LC-HRMS/MS
Lipids play an important role in coffee bean development, coffee brew and in the effects of coffee on human health. They account for around 17% of the dry bean weight and encompass different classes and subclasses, mostly triacylglycerols (TAG) and a minor quantity of phospholipids (PL) and βN-alkan...
2021-11-19 | MTBLS1972 | MetaboLights
TranscriptomicsTranscription profiling of Arabidopsis seed compartments at the mature green stage.
We collected mature green seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing mature green-stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micr...
ORGANISM(S): Arabidopsis thaliana 
2009-03-21 | E-GEOD-15165 | biostudies-arrayexpress
TranscriptomicsIdentification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Our previous results suggested that CLF may play regulatory roles on seed size and lip...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | E-GEOD-68080 | biostudies-arrayexpress
ProteomicsProteomics to identify putative genes underlying fruit ripening and related to long shelf life
Our aim was to gather additional evidence of tomato fruit ripening by assessing two long shelf life near isogenic lines (NILs). These two NILs, named NIL115 and NIL080, carried wild introgression provided by S. pimpinellifolium accession LA0722 in the genetic background of Caimanta (CAI) from S. lyc...
ORGANISM(S): Solanum lycopersicum Solanum pimpinellifolium 
2023-08-02 | PXD036132 | Pride
Fruit ripening Ripening stage  red ripe Solanum spp. Fruit softening Mature green 
GenomicsMethylation Changes in Arabidopsis Mature Green Seed Parts
Seeds are comprised of three major parts of distinct parental origin: the seed coat, embryo, and endosperm. The maternally-derived seed coat is important for nurturing and protecting the seeds during development. By contrast, the embryo and the endosperm are derived from a double fertilization event...
ORGANISM(S): Arabidopsis thaliana 
2014-05-17 | E-GEOD-57755 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of post-mature green seeds from Arabidopsis ddcc mutant and wild-type
The role of on-CG methylation in seed development and dormancy remains unknown. There are four genes in charge of non-CG methylation in Arabidopsis: drm1, drm2, cmt2 and cmt3. The majority of non-CG methylation in vegetative tissues, leaf, is gone in homozygous ddcc mutant line (Hume et al., 2014). ...
ORGANISM(S): Arabidopsis thaliana 
2016-07-03 | E-GEOD-76447 | biostudies-arrayexpress
TranscriptomicsMicroRNAs in a multicellular green alga Volvox carteri
We identified 174 miRNAs expressed in Volvox carteri. Some of Volvox miRNAs are highly enriched in gonidia or somatic cells. Subsequently, we predicted the targets of Volvox miRNAs and found many of target genes were regulated through mRNA degradation. Conservation analysis suggests the common origi...
ORGANISM(S): Volvox carteri 
2014-02-08 | E-GEOD-52345 | biostudies-arrayexpress
TranscriptomicsExpression data from Arabidopsis seed compartments at the mature green stage.
We collected mature green seed compartments from 7 micron paraffin sections using the Leica LMD6000 system in order to identify the mRNAs present in different compartments from seeds containing mature green-stage embryos. For the purposes of this study we captured 6 compartments: embryo proper, micr...
ORGANISM(S): Arabidopsis thaliana 
2009-03-12 | GSE15165 | GEO
TranscriptomicsTranscriptome profiling of post-mature green seeds from Arabidopsis ddcc mutant and wild-type
The role of on-CG methylation in seed development and dormancy remains unknown. There are four genes in charge of non-CG methylation in Arabidopsis: drm1, drm2, cmt2 and cmt3. The majority of non-CG methylation in vegetative tissues, leaf, is gone in homozygous ddcc mutant line (Hume et al., 2014). ...
ORGANISM(S): Arabidopsis thaliana 
2016-01-01 | GSE76447 | GEO
TranscriptomicsIdentification of CLF-regulated transcripts in embryos at the mature-green stage by strand-specific RNA-sequencing in Arabidopsis
CURLY LEAF (CLF), the major histone methyltransferase of Polycomb Repressive Complex 2 (PRC2), modifies trimethylation of histone H3 lysine 27 (H3K27me3) and mediates dynamical chromatin repression in Arabidopsis. Our previous results suggested that CLF may play regulatory roles on seed size and lip...
ORGANISM(S): Arabidopsis thaliana 
2016-03-28 | GSE68080 | GEO
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