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Sohn2010 - Genome-scale metabolic network of Pichia pastoris (PpaMBEL1254) This model is described in the article: Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production. Sohn SB, Graf AB, Kim ...
2015-07-30 | MODEL1507180050 | BioModels
Gene expression profiles of Escherichia coli K-12 W3110 were compared as a function of steady-state external pH. Cultures were grown with aeration to an optical density at 600 nm of 0.3 in potassium-modified Luria-Bertani medium buffered at pH 5.0, 7.0, and 8.7. For each of the three pH conditions, ...
ORGANISM(S): Escherichia coli K12 
Closed-chest reperfused MI was induced in pigs by 90-min occlusion, followed by reperfusion of the mid LAD (day 0) and by cardiac MRI with late enhancement (LE) at day 3. At day 30 the animals received either porcine APOSEC (n=8) or placebo medium (n=8) in a randomized manner, injected into the bord...
ORGANISM(S): Sus scrofa 
In Escherichia coli, pH-dependent gene expression varies with oxygen level. Anaerobic pH-dependent expression ratios were analyzed and compared to the published analysis of aerated cultures (Maurer et al, 2005). E. coli K-12 strain W3110 was cultured in closed tubes containing LBK broth buffered a...
ORGANISM(S): Escherichia coli 
Cytoplasmic and membrane proteome of cells growing in minimal and complex media
ORGANISM(S): Bacillus pumilus (strain SAFR-032) 
2015-03-12 | PXD000780 | Pride
The functionality/integrity of sarcoplasmic reticulum was compared between normal vs. myopathic woody breast tissues in Gallus gallus. Shotgun MS profiling of protein expression revealed an upregulation of calcium transport proteins and a downregulation of proteins responsible for calcium release. ...
ORGANISM(S): Gallus gallus (Chicken) 
2022-05-19 | PXD031445 | Pride
Data from ProteomeXchange, PXD ID: PXD000780. Experiment: O2_U1_gmr_sh_11_1, file: 100223_O2_U1_gmr_sh_11_1_4.mzml. Published as part of J Biotechnol. 2014 Dec 20;192 Pt A:204-14 . From the Abstract: {{i}} Members of the species Bacillus pumilus get more and more in focus of the biotechnological in...
ORGANISM(S): Crap, Bacillus_pumilus_safr_032 
Mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
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