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TranscriptomicsSalmonella response to copper and zinc
Salmonella can infect a wide range of hosts and survive in the environment. This invasive pathogen has therefore evolved and acquired specific traits to cope with different, and in most cases unfavorable, conditions. In particular, transition metal ions are widely spread in these niches. These ions ...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2012-03-15 | E-GEOD-35328 | biostudies-arrayexpress
TranscriptomicsMapping of hns sites in Typhimurium 14028 using a tiling oligo array
The NimbleGen array contains 387,000 46~50-mer oligos, including 377,230 salmonella probes whose sequences only hit genome once. The probes were designed based on Salmonella typhimurium LT2 (NC_003197) genome, with a moving window of about 12 bases. Raw intensities were normalized by the median inte...
ORGANISM(S): Salmonella 
2010-07-01 | E-GEOD-4879 | biostudies-arrayexpress
TranscriptomicsCC2_Navarre_14028srpoSlowhns-_IP_pHNStagged_antiHA
array analysis of immunoprecipitated DNA from tagged HNS proteins in 14028s mutant strain (rpoS low, hns minus) four slides, FLAG-tagged HNS versus gDNA and HA-tagged HNS versus gDNA IP'd using anti-HA, including dye-swaps
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2010-07-01 | E-GEOD-4881 | biostudies-arrayexpress
TranscriptomicsProbing the RyhB-2 regulon in Salmonella Typhimurium
Typically, the expression of sRNAs is activated in response to environmental stimuli in order to regulate gene expression through post-transcriptional mechanisms. In the present work we show that the Salmonella Typhimurium paralog sRNAs RyhB-1 and RyhB-2 are induced in response to the nitrosating ag...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 
2014-06-10 | E-GEOD-58110 | biostudies-arrayexpress
TranscriptomicsCT18_LT2_STv2
comparative DNA hyb of CT18 and LT2 gDNA to the Salmonella chip STv2
ORGANISM(S): Salmonella enterica 
2003-03-06 | E-GEOD-113 | biostudies-arrayexpress
TranscriptomicsHigh-throughput gene expression profiling of Salmonella enterica serovar Paratyphi A in the blood of bacteremic patients in Bangladesh
In this work, we applied an RNA analysis method, Selective Capture of Transcribed Sequences (SCOTS), and cDNA hybridization-microarray technology to identify S. Paratyphi A transcripts expressed by bacteria in the blood of three patients in Bangladesh. In total, we detected 1798 S. Paratyphi A mRNA...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Paratyphi A 
2010-09-06 | E-GEOD-22958 | biostudies-arrayexpress
Transcriptomics14028s_hydrogen_peroxide_2mM_DNA
Gene content in Salmonella enterica sv Typhimurium 14028s after treatment with 2mM hydrogen peroxide
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2010-06-09 | E-GEOD-811 | biostudies-arrayexpress
TranscriptomicsSL1344_hydrogen_peroxide_2mM_DNA
Gene content in Salmonella enterica sv Typhimurium SL1344 post treatment with 2mM hydrogen peroxide
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium 
2010-06-09 | E-GEOD-625 | biostudies-arrayexpress
UnknownDe novo pyrimidine synthesis is necessary for intestinal colonization of Salmonella Typhimurium in chicks
Not available
S-BSST22 | biostudies-other
Transcriptomics267B1, PC3M, LNCaP Methylation Profile vs. mRNA Expression Level
Two prostate immortalized cell lines, 267B1, RWPE-1, Ml-csv40, and five prostate cancer cell lines, PC3, PC3M, PC3M-Pro4, PC3M-LN4 and LNCaP are included in this experiment. Their methylation profile are detected using human promoter array (v11). mRNA expression level are profiled with Affymetrix U1...
ORGANISM(S): Homo sapiens 
2010-06-09 | E-GEOD-951 | biostudies-arrayexpress
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