Mcc - OmicsDI

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Unknown (2364)
Genomics (320)
Transcriptomics (128)
Proteomics (49)
Other (18)
Methylation profiling (16)
Clinical (8)
Models (5)
Metabolomics (5)
Genomic (4)

Organisms

Homo sapiens (142)
Mus musculus (53)
Archaea (33)
Bacteria (33)
Betaherpesvirinae (33)
Borrelia (33)
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Human betaherpesvirus 5 (33)
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Organisms

Homo sapiens (117)
Mus musculus (41)
Rattus norvegicus (3)
Lactobacillus gasseri (2)
Lacticaseibacillus rhamnosus (2)
Bifidobacterium breve (2)
Lactiplantibacillus plantarum (2)
Limosilactobacillus reuteri (2)
Lactobacillus acidophilus (2)
Bifidobacterium breve MCC 1114 (1)
Bifidobacterium breve MCC 0121 (1)
Leptolyngbya sp. NIES-2104 (1)
Bifidobacterium breve MCC 1604 (1)
Bifidobacterium breve MCC 1605 (1)
Bifidobacterium breve MCC 1128 (1)
Bifidobacterium breve MCC 1454 (1)
Bifidobacterium breve MCC 0476 (1)
Bifidobacterium breve MCC 0305 (1)
Bifidobacterium animalis subsp. animalis MCC 0483 (1)
Bifidobacterium animalis subsp. animalis MCC 0499 (1)
Cupriavidus mimosae (1)
Herbaspirillum sp. WGmk3 (1)
Cupriavidus gehlotii (1)
Bifidobacterium breve MCC 1340 (1)
Bifidobacterium breve MCC 1094 (1)
Bifidobacterium animalis subsp. animalis MCC 1489 (1)
Pantoea sp. YU22 (1)
Rufibacter immobilis (1)
Chitinophaga sp. S165 (1)
Alteribacter natronophilus (1)

Repository

ENA (279)
geo (140)
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pride (33)
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Disease

Merkel cell carcinoma (7)
Colorectal Neoplasms (6)
Colorectal cancer NOS (1)
Carcinoma (1)
Acute leukemia (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Breast cancer (1)
Fungal infectious disease (1)
Glioblastoma (1)
Niemann-Pick disease (1)
Periodontitis (1)
Skin cancer (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (14)
Bottom-up proteomics (10)
Data-dependent acquisition (5)
Data-independent acquisition (4)
Gel-based experiment (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
Illumina HiSeq 2000 (1)
Mass spectrometry (1)
ESI (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
LTQ Orbitrap Velos (2)
Orbitrap Fusion (2)
Liquid Chromatography MS - negative - hilic (2)
NextSeq 550 (1)
- (1)
Q Exactive HF (1)
LTQ (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive Plus (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

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2026 (30)
2025 (30)
2024 (28)
2021 (23)
2020 (17)
2014 (13)
2012 (11)
2010 (9)
2019 (8)
2016 (8)
2022 (8)
2015 (6)
2013 (6)
2011 (5)
2009 (3)
2008 (3)
2018 (2)
2007 (1)
2017 (1)
2006 (1)

UNIPROT ID/AC

O43684 (3)
Q12834 (3)
Q13257 (3)
Q9Y6D9 (3)
Q9UJX3 (2)
Q9UJX2 (2)
Q9UJX4 (2)
Q9UM13 (2)
Q8NHZ8 (2)
Q9H1A4 (2)
P30260 (2)
Q9BS18 (2)
Q9NYG5 (2)
Q9UJX6 (2)
Q9UJX5 (2)
Q13042 (2)
Q60566 (2)
O60566 (1)

CHEBI ID

CHEBI:50509 (1)
CHEBI:58262 (1)
CHEBI:15664 (1)
CHEBI:16578 (1)
CHEBI:18425 (1)
CHEBI:184926 (1)
CHEBI:84549 (1)
CHEBI:170340 (1)
CHEBI:197368 (1)
CHEBI:197369 (1)
CHEBI:185779 (1)
CHEBI:172762 (1)
CHEBI:135821 (1)
CHEBI:180757 (1)
CHEBI:27423 (1)
CHEBI:159174 (1)
CHEBI:16214 (1)
CHEBI:160004 (1)
CHEBI:173286 (1)
CHEBI:185983 (1)
CHEBI:158820 (1)
CHEBI:196609 (1)
CHEBI:164479 (1)
CHEBI:158854 (1)
CHEBI:165804 (1)
CHEBI:163500 (1)
CHEBI:20096 (1)
CHEBI:174796 (1)
CHEBI:173157 (1)
CHEBI:196525 (1)

Metabolite Name

L-Valine (2)
Tannin (1)
Spa-5dc (tentative) (1)
Sm d40:1 (1)
Pi 34:0 (1)
Pg 32:0 (1)
Pechueloic acid (1)
Pe(18:1e/20-hdohe) (1)
Pe 34:0 (1)
NCGC00384653-01 (1)
N-epsilon-Acetyl-L-lysine (1)
N-docosanoyltaurine (1)
7Z, 10Z, 13Z, 16Z, 19Z-Docosapentaenoic acid (1)
7,8,2'-trihydroxyflavone (1)
6-trans-12-epi-leukotriene b4 (1)
5.beta.-androstan-3.alpha.-ol-17-one sulfate (1)
5,6-isopropylidene-l-ascorbic acid (1)
4-methylabyssinone v (1)
3-aminopentanoic acid (1)
11-hydroxy-5z,8z,12e,14z,17z-eicosapentaenoic acid (1)
11-deoxy-11-methylene-15-ketoprostaglandin d2 (1)
1,2-Distearoyl-sn-glycerol 3-phosphate (1)
1-(9z,12z-octadecadienoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
(n-(-2-acetamido))-2-aminoethanesulfonic acid (1)
(9e)-11a-hydroxy-3,6,10-trimethyl-6,7,8,11-tetrahydro-4h-cyclodeca[b]furan-2,5-dione (1)
(+-)12-HETE (1)
3,4-dihydroxy-dl-phenylalanine (1)
(E)-4-Hydroxy-3-methyl-but-2-enyl pyrophosphate (1)
4-Diphosphocytidyl-2-C-methylerythritol (1)
2-C-Methyl-d-erythritol-2,4-cyclopyrophosphate (1)

First Public Date

2024 (44)
2023 (43)
2025 (37)
2026 (34)
2014 (30)
2021 (25)
2019 (17)
2022 (13)
2020 (12)
2018 (9)
2015 (6)
2017 (4)
2016 (4)
2013 (1)

Modelling Approach

Ordinary differential equation model (3)
Deep learning (1)
Constraint-based model (1)

Study status

Completed (6)
Not provided (1)
Recruiting (1)

Lab affiliation

Copenhagen University Hospital - Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark (2)
Basilbiotech, Incheon 22002, Republic of Korea. (1)
Bioinformatics Solutions Inc., Waterloo, Ontario, Canada (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge, UK (1)
Cancer Institute, The Affiliated Hospital of Qingdao University, Qingdao University,Qingdao, China (1)
Cell Biology, Harvard Medical School (1)
Dana-Farber Cancer Institute 450 Brookline Avenue Boston, MA 02215 USA (1)
Department of Biochemistry, University of Missouri, USA (1)
Department of Biology, Univ. Lille, Inserm, CHU Lille, U1192-Protéomique Réponse Inflammatoire Spectrométrie de Masse-PRISM,, Lille, FR (1)
Department of Botanical Genetics and Molecular Biology Botanical Institute and Botanic Gardens, Germamy (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
Department of Medical Biology, University of Tromsø, Faculty of Health Sciences NO-9037 Tromsø, Norway (group leader) (1)
Dynamic Omics, Antibody Discovery and Protein Engineering (ADPE), R&D AstraZenecaGaithersburg, Maryland, US, 20878. (1)
Département de Neurochirurgie, CHU Angers, Angers, France Inserm UMR 1307, CNRS UMR 6075, Université de Nantes, CRCI2NA, Université d'Angers, Angers, France (1)
Hangzhou Medical College (1)
Institute of Tumor Biology University Medical Center Hamburg-Eppendorf Martinistraße 52, 20246 Hamburg, Germany (1)
Kocaeli University, Medical School, Department of Medical Biology,41001, Umuttepe, Kocaeli, Turkiye (1)
Kymera Therapeutics, United States (1)
Ludwig-Maximilians-Universität-München Großhaderner Straße 2 D-82152 Planegg-Martinsried (1)
MRC Molecular Haematology Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DS, UK (1)
Marseille Proteomic, MaP-CRCM Centre de Recherche en Cancérologie de Marseille, CRCM Inserm UMR1068, CNRS UMR7258, Aix Marseille Université U105, Institut Paoli Calmettes 27 Boulevard Leï Roure CS30059 13273 Marseille Cedex 09 France (1)
Medical University of Vienna (1)
Medical University of Vienna Clinical Department of Laboratory Medicine Proteomics Core Facility, E5, LS5H Waehringer Guertel 18-20 A-1090 Wien, Austria (1)
Prof Jochen H. M. Prehn Department of Physiology and Medical Physics Royal College of Surgeons in Ireland 123 St Stephen’s Green Dublin 2, Ireland (1)
Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), 1030 Vienna, Austria. (1)
The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), Shenzhen 518020, China (1)
Unité des Aspergillus 28, rue du Docteur Roux 75015 Paris (1)
Univ. Lille, Inserm, U-1192 - Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse-PRISM, F-59000, Lille, France (1)
University of Edinburgh (1)
Université Côte d'Azur, CNRS (1)

Keyword

MCC (2)
CRC (2)
Immunotherapy (2)
IL2 (1)
CcRCC (1)
Intrahepatic (1)
Extrahepatic (1)
Gastroesophageal Junction (1)
Microsatellite Instability-High (1)
Mismatch Repair Deficient (1)
BCC (1)
Tumor Mutation Burden High (1)
TMB-H (1)
Hand-foot syndrome (1)
Genetic mutation testing (1)
Tumor tissue sampling (1)
S1 (1)
Teysuno (1)
MMS (1)
CMS4 (1)
ElevatION:CRC-102 (1)
FOFLOX4 (1)
Resectable liver metastasis from colorectal cancer (1)
GEJ (1)
KRAS wild type metastatic colorectal cancer with no prior exposure to EGFR inhibitors (1)
Fluoropyrimidine (1)
CSCC (1)
Anti-PD-1 (1)
KRAS wild type (1)
HCC (1)

IsPrivate

False (5)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (6)
fungi (1)

Study type

Transcription profiling by array (37)
RNA-seq of coding RNA (7)
Interventional (7)
Cell line - One-color microarray (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Genotyping by array (1)
Antigen profiling (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Observational (1)

Release Date

2025 (296)
2022 (292)
2023 (276)
2021 (258)
2024 (229)
2020 (213)
2019 (146)
2018 (140)
2017 (99)
2016 (87)
2015 (72)
2014 (67)
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2012 (40)
2011 (40)
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2009 (20)
2008 (10)
2001 (5)
2006 (4)
2007 (3)
2003 (3)
2005 (2)
2004 (1)

Location

Canada (3)
Singapore (2)
Netherlands (2)
United States (2)
Australia (2)
Greece (1)
China (1)
South Korea (1)
Israel (1)
Italy (1)
Spain (1)

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Microarray analysis of Merkel cell carcinoma (MCC) tumors, small cell lung cancer (SCLC) tumors, and MCC cell lines

When using cell lines to study cancer, phenotypic similarity to the original tumor is paramount. Yet, little has been done to characterize how closely Merkel cell carcinoma (MCC) cell lines model native tumors. To determine their similarity to MCC tumor samples, we characterized MCC cell lines via g...

ORGANISM(S): Homo sapiens

2014-12-23 | E-GEOD-50451 | biostudies-arrayexpress

Data from plasma metabolome analysis of APP-KI and Wild type mice treated with B. breve MCC1274

Not available

ORGANISM(S): Mus musculus

ST002153 | MetabolomicsWorkbench

Lacticaseibacillus rhamnosus strain:MCC 0256

Lacticaseibacillus rhamnosus strain:MCC 0256 Genome sequencing

PRJNA990525 | ENA

Bifidobacterium breve strain:MCC 0229

Bifidobacterium breve strain:MCC 0229 Genome sequencing

PRJNA1274818 | ENA