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TranscriptomicsFinding new Chimeric RNAs in RNA-seq data, a test study in Acute Myeloid Leukemia patient cells
In this strudy, we seek out new chimeric RNA in RNA-seq data from acute myeloid leukemia (AML) patient cells as new biomarkers to improve diagnosis and prognosis in cancer. Total RNA were extracted from bone marrow or peripheral blood mononuclear cells in three AML patients. polyA+ cDNAs were sequen...
ORGANISM(S): Homo sapiens 
2017-06-28 | E-MTAB-5767 | biostudies-arrayexpress
TranscriptomicsRhodobacter sphaeroides respiration and photosynthesis
This series contains two subsets of samples not being directly compared. The two subsets are: GSE2145: 30% O2 vs PS 10W/m2 GSE2146: CT01 vs wild-type at 3% O2 Below results represent the K-means (K=4) clustering analysis using GeneSpring software. The list contains genes/ORFs contained in each of ...
ORGANISM(S): Rhodobacter sphaeroides 
2005-04-01 | E-GEOD-2150 | biostudies-arrayexpress
TranscriptomicsPin1/mutant-p53 jointly controlled genes
To investigate the specific gene expression program by which mutant-p53 and Pin1 control invasion and metastasis in breast cancer cells, we compared the transcriptomic profile of control, mutant-p53 depleted or Pin1 depleted MDA-MB-231 cells. MDA-MB-231 cells were transfected twice with siRNA agains...
ORGANISM(S): Homo sapiens 
2011-05-30 | E-GEOD-26262 | biostudies-arrayexpress
TranscriptomicsExpression Differences in Ethanol Stress Response Between Saccharomyces cerevisiae Parent W303-1A Strain and its Two Ethanol Tolerant Mutants
Saccharomyces spp. are widely used for ethanol production however fermentation productivity is negatively affected by the impact of ethanol accumulation on yeast metabolic rate and viability. This study used microarray and statistical two-way ANOVA analysis to compare and evaluate gene expression pr...
ORGANISM(S): Saccharomyces cerevisiae 
2010-07-01 | E-GEOD-21120 | biostudies-arrayexpress
TranscriptomicsAryl hydrocarbon receptor antagonists promote the expansion of human hematopoietic stem cells
Although practiced clinically for more than 40 years, the use of hematopoietic stem cell (HSC) transplants remains limited by the ability to expand these cells ex vivo. An unbiased screen with primary human HSCs identified a purine derivative, StemRegenin 1 (SR1), that promotes the ex vivo expansion...
ORGANISM(S): Homo sapiens 
2011-04-04 | E-GEOD-28359 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human oral sqamous cell carcinoma patients vs normal samples to associate gene expression profiles and tumor invasion
There are limited studies attempting to correlate the expression changes in oral squamous cell carcinoma with clinically relevant variables. We determined the gene expression profile of 16 tumor and 4 normal tissues from 16 patients by means of Affymetrix Hu133A GeneChips. The hybridized RNA was iso...
ORGANISM(S): Homo sapiens 
2007-10-27 | E-GEOD-3524 | biostudies-arrayexpress
UnknownCan an amino acid-based oral rehydration solution be effective in managing immune therapy-induced diarrhea?
Not available
S-EPMC9281899 | biostudies-literature
ModelsFord2020 - whole-body vitamin A metabolism in humans
No description
2024-03-01 | MODEL2312190001 | BioModels
UnknownCDMS Analysis of Intact 19S, 20S, 26S, and 30S Proteasomes: Evidence for Higher-Order 20S Assemblies at a Low pH†.
Not available
S-EPMC10916762 | biostudies-literature
UnknownAssessment of respirable aerosol concentrations using local ventilation controls in an open multi-chair dental clinic.
Not available
S-EPMC11959533 | biostudies-literature
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