Medema R R - OmicsDI

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Unknown (100)
Transcriptomics (10)
Metabolomics (10)
Proteomics (3)
Other (1)

Organisms

Homo sapiens (10)
Streptomyces clavuligerus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (10)
MetaboLights (7)
GNPS (3)
pride (2)
GPMDB (1)
MassIVE (1)

Tissue

Cell culture (1)

Disease

Not Available (1)
Lung cancer (1)

Technology Type

Mass spectrometry (6)
Mass Spectrometry (2)
Mass spectrometry assay (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
LTQ FT (2)
Xevo G2 Q-Tof (1)
Instrument (1)
LTQ (1)
LTQ Orbitrap (1)
MS:1000031 (1)
Direct infusion MS - (1)
Liquid Chromatography MS - positive (1)
MS Imaging - (1)

Publication Date

2023 (5)
2005 (3)
2022 (2)
2016 (2)
2011 (2)
2014 (2)
2015 (1)
2010 (1)
2017 (1)
2020 (1)
2024 (1)
2025 (1)
2021 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:28716 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:145227 (1)
CHEBI:15603 (1)
CHEBI:15756 (1)
CHEBI:15783 (1)
CHEBI:16016 (1)
CHEBI:16113 (1)
CHEBI:16123 (1)
CHEBI:16196 (1)
CHEBI:16235 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,2-Dihydrosantonin (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
10-Hydroxydecanoic acid (1)
12-Hydroxydodecanoic acid (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)

Study type

Transcription profiling by array (9)
Unknown experiment type (1)

Release Date

2016 (13)
2021 (13)
2020 (12)
2022 (9)
2024 (9)
2015 (6)
2005 (6)
2025 (6)
2023 (6)
2019 (6)
2011 (4)
2018 (4)
2017 (3)
2014 (3)
2013 (3)
2010 (2)
2026 (2)
2012 (1)
2009 (1)
2003 (1)

Lab affiliation

Mass spectrometry/Proteomics Facility, The Netherlands Cancer Institute, Amsterdam, The Netherlands; Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands (1)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (1)

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Standardization for natural product synthetic biology.

Not available

S-EPMC4963270 | biostudies-literature

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights

Transcription profiling of human cells expressing FoxM1-ER fusion protein

Experiment description To identify FoxM1-regulated genes, we carried out gene expression profile analysis after inducible activation of a FoxM1-ER fusion protein using high-density human cDNA microarrays. We constructed a stable line of U2OS cells expressing full-length HA-FoxM1 fused at its C-term...

ORGANISM(S): Homo sapiens

2005-01-01 | E-MEXP-230 | biostudies-arrayexpress

The core spliceosome as target and effector of non-canonical ATM signalling.

Not available

S-EPMC4501432 | biostudies-literature

Die-off of plant pathogenic bacteria in tile drainage and anoxic water from a managed aquifer recharge site.

Not available

S-EPMC8099070 | biostudies-literature

SANDPUMA: ensemble predictions of nonribosomal peptide chemistry reveal biosynthetic diversity across Actinobacteria.

Not available

S-EPMC5860034 | biostudies-literature

Dose-response relationship of Ralstonia solanacearum and potato in greenhouse and in vitro experiments.