Meehan E E - OmicsDI

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Unknown (221)
Transcriptomics (23)
Metabolomics (11)
Genomics (3)
Proteomics (2)

Organisms

Mus musculus (17)
Homo sapiens (11)

Repository

biostudies-arrayexpress (26)
MetaboLights (10)
pride (2)
GNPS (1)

Tissue

Astrocyte (1)
Blood plasma (1)
Brain (1)

Disease

Brain cancer (1)
Brain glioblastoma multiforme (1)

Technology Type

Mass spectrometry (8)
Mass spectrometry assay (2)
Mass Spectrometry (2)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - negative - hilic (2)
Illumina iScan microarray scanner (1)
Agilent Surescan High Resolution DNA microarray Scanner (1)
Illumina iScan (1)
Agilent Surescan High Resolution DNA Microarray Scanner (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
LTQ FT (1)
MaXis (1)
Liquid Chromatography MS - positive (1)

Publication Date

2016 (8)
2014 (8)
2023 (7)
2013 (6)
2011 (2)
2022 (1)
2012 (1)
2015 (1)
2025 (1)
2024 (1)
2021 (1)
2026 (1)
2018 (1)

CHEBI ID

CHEBI:16359 (4)
CHEBI:28865 (4)
CHEBI:30769 (4)
CHEBI:27997 (3)
CHEBI:35038 (3)
CHEBI:116314 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15422 (2)
CHEBI:15603 (2)
CHEBI:15741 (2)
CHEBI:16002 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16551 (2)
CHEBI:16610 (2)
CHEBI:16708 (2)
CHEBI:16709 (2)
CHEBI:16761 (2)
CHEBI:16856 (2)
CHEBI:16870 (2)
CHEBI:17191 (2)
CHEBI:173703 (2)
CHEBI:17561 (2)
CHEBI:17687 (2)
CHEBI:17750 (2)
CHEBI:17858 (2)
CHEBI:17895 (2)
CHEBI:18012 (2)

Metabolite Name

Cholic acid (4)
Elaidic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Citric acid (2)
D-(+)-Trehalose (2)
Dibutyl phthalate (DBP) (2)
Dihydroxyacetone phosphate (2)
Lactulose (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
Taurocholic acid (2)
(+)-Pantothenic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-Mevalonic acid (1)
-Linolenic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1,5-Anhydro-D-sorbitol (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)

Study type

Methylation profiling by array (11)
Transcription profiling by array (7)
Methylation profiling by high throughput sequencing (3)
RNA-seq of coding RNA (3)
MeDIP-seq (1)
Other (1)

Release Date

2022 (34)
2021 (26)
2020 (22)
2024 (20)
2023 (17)
2017 (17)
2014 (16)
2025 (16)
2018 (16)
2016 (15)
2019 (11)
2013 (10)
2015 (7)
2012 (6)
2011 (6)
2010 (4)
2026 (2)
2008 (2)

Lab affiliation

Janusz Rak MD, PhD Jack Cole Chair in Pediatric Hematology/Oncology Professor, Department of Pediatrics McGill University The Research Institute of the McGill University Health Centre Montreal Children's Hospital 1001 Decarie Blvd, Office # E M1 2244 Montreal, Quebec, H4A 3J1 Phone: (514) 412-4400 ext-office: 76240; -lab: 76220; Fax (514) 412-4331 (1)
University of Illinois Urbana-Champaign (1)

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Genome-wide 5-hydroxymethylcytosine (5hmC) profiling by hMeDIP-seq in primary human CD4+T-cells polarized towards Th1 and Th2 time-series

Differentiation of CD4+T-cells into effector subsets is a critical component of the adaptive immune system and an incorrect response can lead to autoimmunity or immune deficiency. Cellular differentiation including T-cell differentiation is accompanied by large-scale epigenetic remodeling, including...

ORGANISM(S): Homo sapiens

2016-07-11 | E-MTAB-4686 | biostudies-arrayexpress

Nose-Only Exposure to Cherry- and Tobacco-Flavored E-Cigarettes Induced Lung Inflammation in Mice in a Sex-Dependent Manner.

Not available

S-EPMC9413458 | biostudies-literature

Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems (hmeDIP-seq)

5hmC profiling of mouse embryonic fibroblasts before and during adaptation to cell culture conditions using 5hmC-Seq. Related data sets for this study have also been deposited in ArrayExpress under accessions E-MTAB-3172 (expression profiling by microarray), E-MTAB-3176 (methylation profiling of 5-m...

ORGANISM(S): Mus musculus

2014-12-19 | E-MTAB-3183 | biostudies-arrayexpress

E-cigarettes can emit formaldehyde at high levels under conditions that have been reported to be non-averse to users.

Not available

S-EPMC5954153 | biostudies-literature

Rapid reprogramming of epigenetic and transcriptional profiles in mammalian culture systems

Comparison of the methylation profile of mouse embryonic fibroblasts (MEFs) before and during adaptation to cell culture conditions. Matched expression data is deposited under accession: E-MTAB-3172

ORGANISM(S): Mus musculus

2014-12-17 | E-MTAB-3176 | biostudies-arrayexpress

Aerosol Gas-Phase Components from Cannabis E-Cigarettes and Dabbing: Mechanistic Insight and Quantitative Risk Analysis.

Not available

S-EPMC6777088 | biostudies-literature

Plasmid-encoded toxin defence mediates mutualistic microbial interactions

Gut environments harbour dense microbial ecosystems in which plasmids are widely distributed. Plasmids facilitate the exchange of genetic material among microorganisms while enabling the transfer of a diverse array of accessory functions. However, their precise impact on microbial community compo...

2023-08-10 | MTBLS7248 | MetaboLights

MGIT Enriched Shotgun Metagenomics for Routine Identification of Nontuberculous Mycobacteria: a Route to Personalized Health Care.

Not available

S-EPMC10035320 | biostudies-literature

Clinical Activity of the γ-Secretase Inhibitor PF-03084014 in Adults With Desmoid Tumors (Aggressive Fibromatosis).

Not available

S-EPMC5455706 | biostudies-literature

DNA methylation profiling of primary human CD4+T-cell memory subsets

ORGANISM(S): Homo sapiens

2016-07-11 | E-MTAB-4689 | biostudies-arrayexpress