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TranscriptomicsTranscription profiling of Arabidopsis ap1-1 and cal-1 mutations and expressing a fusion between AGAMOUS and the rat glucocorticoid receptor (35S:AGGR) during early flower development in Arabidopsis
Floral organs, whose identity is determined by specific combinations of homeotic genes, originate from a group of undifferentiated cells called the floral meristem. In Arabidopsis, the homeotic gene AGAMOUS (AG) terminates meristem activity and promotes development of stamens and carpels. To unders...
ORGANISM(S): Arabidopsis thaliana 
2008-06-16 | E-GEOD-9605 | biostudies-arrayexpress
TranscriptomicsUnique microRNA profiles in EGFR-mutated lung adenocarcinomas
We have examined the microRNA expression in 154 lung adenocarcinoma samples and 20 paired normal lung tissue samples and investigated the microRNA expression to clinical variables, EGFR- and KRAS- mutational status and time to progression. 174 samples are analyzed. 154 from lung adenocarcinoma tumor...
ORGANISM(S): Homo sapiens 
2014-03-10 | E-GEOD-48414 | biostudies-arrayexpress
TranscriptomicsINTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA (CGH)
Using high-resolution genomic microarray analysis, a distinct genomic profile was defined in 114 samples from patients with splenic marginal zone lymphoma (SMZL). Notably, deletion or uniparental disomy of chromosome 7q were detected in 39% of SMZLs but in only 9 of 170 (5%) mature B-cell lymphomas ...
ORGANISM(S): Homo sapiens 
2012-07-31 | E-GEOD-35367 | biostudies-arrayexpress
TranscriptomicsINTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA (SNP data)
Using high-resolution genomic microarray analysis, a distinct genomic profile was defined in 114 samples from patients with splenic marginal zone lymphoma (SMZL). Notably, deletion or uniparental disomy of chromosome 7q were detected in 39% of SMZLs but in only 9 of 170 (5%) mature B-cell lymphomas ...
ORGANISM(S): Homo sapiens 
2012-07-31 | E-GEOD-35329 | biostudies-arrayexpress
TranscriptomicsA molecular signature for MET-targeted therapy
Constitutive MET signaling promotes invasiveness in primary and recurrent GBM; however, current MET-targeting strategies lack of effective biomarkers for selecting suitable patients for treatment. Here, we identified a predictive signature potentially valuable for indicating vulnerability to MET-tar...
ORGANISM(S): Mus musculus 
2016-01-05 | E-GEOD-64667 | biostudies-arrayexpress
MetabolomicsThe Effect of Dietary BIoactives on Gut Microbiome DivErsity (DIME) - A pilot study (Untargeted metabolomics)

The gut microbiome refers to the complex community of microorganisms (bacteria, fungi, archaea and viruses) present within our gut. The composition and complexity of gut microbiota communities are crucial for maintaining human health. Humans depend on the gut microbiota to undertake essential met...

2025-10-10 | MTBLS8100 | MetaboLights
TranscriptomicsINTEGRATIVE ONCOGENOMIC AND HIGH-THROUGHPUT SEQUENCING ANALYSES OF THE COMMONLY DELETED REGION IN CHROMOSOME 7q32 IN SPLENIC MARGINAL ZONE LYMPHOMA (expression)
Using high-resolution genomic microarray analysis, a distinct genomic profile was defined in 114 samples from patients with splenic marginal zone lymphoma (SMZL). Notably, deletion or uniparental disomy of chromosome 7q were detected in 39% of SMZLs but in only 9 of 170 (5%) mature B-cell lymphomas ...
ORGANISM(S): Homo sapiens 
2012-07-31 | E-GEOD-35082 | biostudies-arrayexpress
MetabolomicsMapping human microbiome drug metabolism by gut bacteria and their genes

Individuals vary widely in their drug responses, which can be dangerous and expensive due to treatment delays and adverse effects. Growing evidence implicates the gut microbiome in this variability, however the molecular mechanisms remain largely unknown. We measured the ability of 76 diverse hum...

2019-07-10 | MTBLS896 | MetaboLights
TranscriptomicsRetrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes.
Expression in seven tissues from Oryza sativa L. ssp japonica Nipponbare was profiled using RNA-sequencing: callus, leaf, root, seed, shoot, panicle before flowering, and panicle after flowering. The original experiment examined gene expression in the seven tissues, and utilized the data both to com...
ORGANISM(S): Oryza sativa Japonica Group 
2011-12-21 | E-MTAB-2037 | biostudies-arrayexpress
MetabolomicsThe Effect of Dietary Bioactives on Gut Microbiome DivErsity (DIME) - A pilot study (Targeted metabolomics)

The gut microbiome refers to the complex community of microorganisms (bacteria, fungi, archaea and viruses) present within our gut. The composition and complexity of gut microbiota communities are crucial for maintaining human health. Humans depend on the gut microbiota to undertake essential met...

2025-10-10 | MTBLS7290 | MetaboLights
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