Mendoza M M - OmicsDI

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Unknown (2638)
Transcriptomics (33)
Proteomics (32)
Metabolomics (12)
Genomics (11)
Models (9)

Organisms

Homo sapiens (35)
Mus musculus (18)
Halobacterium salinarum (5)
Natronomonas pharaonis (1)
Rhizobium etli (1)
Mycobacterium tuberculosis (1)
Hordeum vulgare subsp. vulgare (1)
Caenorhabditis elegans (1)
Saccharomyces cerevisiae (1)
Acanthamoeba castellanii (1)
Acanthamoeba castellanii str. Neff (1)
Bacteria (1)
Bos taurus (1)
Candida albicans (1)
Canis lupus familiaris (1)
Cupiennius salei (1)
Emergomyces africanus (1)
Lathyrus oleraceus (1)
Mnemiopsis leidyi (1)
Mycobacterium tuberculosis H37Rv (1)
Paramecium tetraurelia (1)
Phaseolus vulgaris (1)
Plasmodium falciparum V1 (1)
Rattus norvegicus (1)
Rhizobium leguminosarum bv. phaseoli 4292 (1)
Rhizobium leguminosarum bv. viciae (1)
Salmo salar (1)
Semliki Forest virus (1)
Trypanosoma cruzi (1)
Viruses (1)

Organisms

Eugenia sp. KUELAP-7583 (1)

Repository

biostudies-arrayexpress (42)
pride (31)
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BioModels (6)
Cell Collective (3)
ENA (2)
GNPS (1)
MassIVE (1)

Tissue

Cell culture (7)
Brain (3)
Cell suspension culture (2)
Epithelial cell (2)
Permanent cell line cell (2)
Tooth enamel (2)
Bacteroid (1)
Blood (1)
Blood cell (1)
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Lung (1)
Macrophage (1)
Monocyte (1)
Neuroblastoma cell (1)
Pancreas (1)
Root nodule (1)
Stem cell (1)
Testis (1)
Urine (1)
Venom (1)
Whole body (1)

Disease

Severe acute respiratory syndrome (2)
Alzheimer's disease 1 (1)
Alzheimer's disease 3 (1)
Alzheimer's disease 4 (1)
Breast cancer (1)
Candidiasis (1)
Chagas disease (1)
Kidney disease (1)
Mucolipidosis II alpha/beta (1)
Neuroblastoma (1)
Prostate adenocarcinoma (1)
Pulmonary tuberculosis (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (18)
Mass spectrometry (10)
Bottom-up proteomics (6)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (4)
Data-independent acquisition (2)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - negative - reverse phase (3)
MinION (2)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)

Publication Date

2023 (13)
2016 (10)
2011 (9)
2013 (7)
2022 (7)
2005 (6)
2025 (6)
2021 (5)
2026 (5)
2015 (4)
2014 (4)
2012 (4)
2019 (4)
2017 (2)
2020 (2)
2010 (1)
2008 (1)
2024 (1)
2018 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10043 (1)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:134457 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

First Public Date

2026 (1)
2024 (1)

Modelling Approach

Ordinary differential equation model (5)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (15)
ChIP-seq (9)
RNA-seq of coding RNA (9)
Other (5)
Comparative genomic hybridization by array (2)
Genotyping by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (350)
2025 (316)
2023 (299)
2021 (291)
2024 (283)
2020 (223)
2019 (144)
2018 (144)
2016 (121)
2017 (101)
2015 (82)
2026 (65)
2014 (63)
2013 (48)
2011 (39)
2012 (36)
2010 (27)
2008 (14)
2009 (10)
2006 (8)
2007 (5)
2005 (4)
2004 (2)
2002 (2)
2000 (2)
2003 (1)

Lab affiliation

1Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, 160 College Street, Toronto, Ontario M5S 3E1, Canada 2Department of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada Departments of Biochemistry and Biology, Boston University, 71 E. Concord St, Boston, MA 02118, USA (1)
Bioanalytical Mass Spectrometry Facility Mark Wainwright Analytical Centre University of NSW Australia (1)
Bioanalytical Mass Spectrometry Facility Mark Wainwright Analytical Centre. Room 404B, Lv4 Wallace Wurth Building C27 UNSW Australia www.bmsf.unsw.edu.au Affiliated with: Paleontology, Geobiology and Earth Archives Research Centre (PANGEA) http://www.pangea.unsw.edu.au/ (1)
Centre for Genomic Regulation (Barcelona, Spain) (1)
Centro Nacional de Biotecnología CNB/CSIC (1)
Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
Department of Biochemistry and Biophysics Smilow Center for Translational Research Perelman School of Medicine University of Pennsylvania 3400 Civic Center Blvd Philadelphia, PA 19104 (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY, 10461, USA (1)
Department of Chemistry and Biochemistry University of Bern Freiestrasse 3 3012 Bern Switzerland (1)
Department of Experimental Medical Science, Lung Biology Unit, Lund University, 22184, Lund, Sweden (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Physiology and Biophysics, Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil. (1)
Fluminense Federal Unibersity (1)
IBCP-CCMP, CNRS, LYON France (1)
Institute for Systems Biology (1)
Institute of Cell Biology University of Bern (1)
Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (1)
Instituto Biomédico, Departamento de Microbiologia e Parasitologia – MIP, Universidade Federal Fluminense (1)
Instituto Biomédico, Departamento de Microbiologia e Parasitologia – MIP, Universidade Federal Fluminense, Rua Prof. Hernani Pires de Melo 101, São Domingos, Niterói-RJ, Brazil, ZipCode 24210-130, Phone: +55 21 2629-2410 (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Laboratorio de Neuroinmunobiología, Departamento de Medicina Molecular y Bioprocesos. Instituto de Biotecnología, Universidad Nacional Autónoma de México (UNAM), Cuernavaca, Morelos 62210, México (1)
Molecular Plant Sciences Section Department of Biology University of Oxford Oxford OX1 3RB, UK (1)
Morpho-phisiology department, Faculty of Medicine, NAtional University of Cuyo. IHEM (Histology and Embriology Institute of Mendoza), CONICET, Mendoza Argentina. (1)
Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, ON, Canada (1)
Professor, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden (1)
Proteomics facility, Central Science Laboratory, University of Tasmania, Australia (1)
Translational Control and Metabolism, German Cancer Research Center (DKFZ), Heidelberg, Germany (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)

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Monitoring of SARS-CoV-2 RNA in wastewater as an epidemiological surveillance tool in Mendoza, Argentina.

Not available

S-EPMC8426053 | biostudies-literature

HPE1, an Effector from Zebra Chip Pathogen Interacts with Tomato Proteins and Perturbs Ubiquitinated Protein Accumulation.

Not available

S-EPMC8396652 | biostudies-literature

Global gene expression in two potato cultivars in response to 'Candidatus Liberibacter solanacearum' infection.

Not available

S-EPMC5725879 | biostudies-literature

Insights into Metabolic Changes Caused by the Trichoderma virens-Maize Root Interaction

The interactions of crops with root-colonizing endophytic microorganisms are highly relevant to agriculture, because endophytes can modify plant resistance to pests and increase crop yields. We investigated the interactions between the host plant Zea mays and the endophytic fungus Trichode...

2021-07-08 | MTBLS1964 | MetaboLights

Drivers of tropical rainforest composition and alpha diversity patterns over a 2,520 m altitudinal gradient.

Not available

S-EPMC6540655 | biostudies-literature

Lasting consequences of psyllid (Bactericera cockerelli L.) infestation on tomato defense, gene expression, and growth.

Not available

S-EPMC7905647 | biostudies-literature

Fanconi anemia and checkpoint recovery

The FA/BRCA pathway repairs DNA interstrand crosslinks. Mutations in this pathway cause Fanconi anemia (FA), a chromosome instability syndrome with bone marrow failure and cancer predisposition. Upon DNA damage, normal and FA cells inhibit the cell cycle progression, until the G2/M checkpoint is tur...

4790 | Cell Collective

'Candidatus liberibacter solanacearum' protein CKC_05770 interacts in vivo with tomato APX6 and APX7.

Not available

S-EPMC11953316 | biostudies-literature

The G2-to-M Transition Is Ensured by a Dual Mechanism that Protects Cyclin B from Degradation by Cdc20-Activated APC/C.

Not available

S-EPMC7778526 | biostudies-literature

Genome-wide mapping of human DNA-replication origins: levels of transcription at Orc1 sites regulate origin selection and replication timing

We report the genome-wide mapping of Orc1 binding-sites in mammals and their validation as active DNA-replication origins (ORIs). Orc1 sites are universally associated with transcription start sites (TSSs) of coding or non-coding RNAs. Transcription levels at the Orc1 sites directly correlate with r...

ORGANISM(S): Homo sapiens

2012-09-18 | E-GEOD-37583 | biostudies-arrayexpress

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