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TranscriptomicsTranscription profiling of Vibrio cholerae isolated from patients in stationary phase
All arrays used in Hyperinfectivity study Merrell DS, Butler SM, Qadri F, Dolganov NA, Alam A, Cohen MB, Calderwood SB, Schoolnik GK, Camilli A. Related Articles Host-induced epidemic spread of the cholera bacterium. Nature. 2002 Jun 6;417(6889):642-5. PMID: 12050664 A=patient A, B=patient B, C=...
ORGANISM(S): Vibrio cholerae 
2005-07-21 | E-SMDB-1384 | biostudies-arrayexpress
TranscriptomicsE.coli Infected Bladder Samples (PBS, WT and 2 mutants)
Study of host response in mice to uropathogenic E. coli (UPEC) infection and the contribution of deletion of the Cnf and HlyA1 toxins to the host response. Mice were infected with UPEC in the bladder for 24 hrs and RNA was isolated from whole bladder to analyze on Agilent whole mouse 2-channel array...
ORGANISM(S): Mus musculus 
2013-02-06 | E-GEOD-37959 | biostudies-arrayexpress
TranscriptomicsShigella Apoptosis Arrays
Array data from HeLa cells that remained Uninfected or were infected with wildtype S. flexneri serotype 2a strain 2457T. These groupings are further divided such that Uninfected or Infected cells remained untreated or were treated with the apopotosis inducer staurosporine (STS). The design of the ...
ORGANISM(S): Homo sapiens 
2010-06-12 | E-GEOD-22287 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of H. pylori stationary (Stat Chelate and Stat.iron.survival)and exponential (Log Chelate and Log.iron.survival) subjected to chelation using DPP
This data set was used to determine genes that are regulated by iron availability and to access the growth phase dependence on that regulation. Stationary (Stat Chelate and Stat.iron.survival)and exponential (Log Chelate and Log.iron.survival)were subjected to chelation using DPP. Growth status of...
ORGANISM(S): Helicobacter pylori 
2005-10-14 | E-SMDB-2267 | biostudies-arrayexpress
TranscriptomicsDifferential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
In this study transcriptional start sites (TSS) for H. pylori 26695 were determined To detect the complement of transcripts expressed from H. pylori, we collected three independent biological replicates (B1 – B3) from 26695 wild type strain grown to mid-exponential (OD 600 ~0.6) phase under microaer...
ORGANISM(S): Helicobacter pylori 26695 
2015-07-01 | E-GEOD-67564 | biostudies-arrayexpress
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