Metatranscriptomic

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Genomics (1674)
Unknown (942)
Transcriptomics (55)
Proteomics (31)
Metabolomics (14)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Mus musculus (6)
Homo sapiens (6)
mixed culture KAZ_0815 (2)
Ficus obtusifolia (2)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (2)
Microbacterium oxydans (1)
environmental samples (1)
Candidatus Pelagibacter ubique HTCC1062 (1)
marine metagenome (1)
Skeletonema marinoi (1)
soil metagenome (1)
synthetic construct (1)
Mycoplasmopsis bovis (1)
lung metagenome (1)
Methylomirabilis oxygeniifera (SeqCode) (1)
Candidatus Accumulibacter phosphatis (1)
Prochlorococcus marinus str. MIT 9313 (1)
Tiamatvirus PSSP7 (1)
Prochlorococcus phage P-SSM4 (1)
Glaesserella parasuis str. Nagasaki (1)
Bacillus toyonensis (1)
Microbacterium foliorum (1)
Rhodococcus qingshengii (1)
Curtobacterium flaccumfaciens (1)
leaf litter metagenome (1)
Candidatus Kuenenia stuttgartensis (1)
Streptococcus thermophilus ASCC 1275 (1)
uncultured bacterium (1)
Ocimum basilicum (1)
Peronospora belbahrii (1)

Organisms

soil metagenome (191)
lake water metagenome (117)
microbial mat metagenome (54)
marine metagenome (35)
hypersaline lake metagenome (28)
coral metagenome (26)
hot springs metagenome (23)
rhizosphere metagenome (18)
Homo sapiens (17)
wastewater metagenome (10)
activated sludge metagenome (9)
seawater metagenome (7)
gut metagenome (7)
human gut metagenome (7)
bovine gut metagenome (6)
plant metagenome (6)
uncultured Syntrophaceae bacterium (5)
food fermentation metagenome (5)
bioreactor metagenome (5)
Herbaspirillum sp. JGI 000192CP-E06 (4)
sludge metagenome (4)
mouse gut metagenome (4)
marine sediment metagenome (4)
halite metagenome (3)
Herbaspirillum sp. JGI 000194CP-F03 (3)
plastic metagenome (3)
aquatic metagenome (3)
freshwater sediment metagenome (3)
biofilm metagenome (3)
human oral metagenome (3)

Repository

ENA (1668)
pride (26)
geo (24)
NODE (24)
biostudies-arrayexpress (14)
MetaboLights (11)
MassIVE (5)
GNPS (2)
dbGaP (1)
MetabolomicsWorkbench (1)

Tissue

Photosynthetic cell (3)
Cell culture (2)
Cecum (1)
Blood (1)
Lung (1)
Microorganism (1)
Cellular response to environmental stimulus (1)
Dental plaque (1)
Epithelial cell (1)
Ileum (1)
Mantle (1)

Disease

Disease free (3)
Pneumonia (1)
Dental caries (1)
Parkinson's disease (1)
Type 1 diabetes mellitus (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (18)
Mass spectrometry (9)
Bottom-up proteomics (4)
Gel-based experiment (3)
Mass spectrometry assay (2)
ESI (1)
Data-dependent acquisition (1)
HDMSE (1)

Instrument Platform

Q Exactive (6)
Liquid Chromatography MS - positive - reverse phase (6)
Illumina HiSeq 2000 (2)
Flow injection analysis MS - negative (2)
15 mL Falcon tubes (1)
ScriptSeq v2 Complete Gold Kit (Epidemiology)(Epicentre), ScriptSeq Index PCR primers (Set 1) (Epicentre) (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2020 (12)
2024 (9)
2010 (8)
2026 (8)
2025 (7)
2021 (6)
2023 (5)
2019 (4)
2016 (4)
2015 (4)
2022 (4)
2018 (3)
2013 (2)
2009 (2)
2017 (2)
2008 (1)
2014 (1)

CHEBI ID

CHEBI:422 (3)
CHEBI:16857 (3)
CHEBI:32816 (3)
CHEBI:15729 (3)
CHEBI:18019 (3)
CHEBI:16015 (3)
CHEBI:15428 (3)
CHEBI:17191 (3)
CHEBI:143745 (2)
CHEBI:195271 (2)
CHEBI:35038 (2)
CHEBI:21949 (2)
CHEBI:34687 (2)
CHEBI:16811 (2)
CHEBI:73858 (2)
CHEBI:34494 (2)
CHEBI:15824 (2)
CHEBI:16610 (2)
CHEBI:16551 (2)
CHEBI:28044 (2)
CHEBI:30746 (2)
CHEBI:30835 (2)
CHEBI:17561 (2)
CHEBI:28364 (2)
CHEBI:16359 (2)
CHEBI:30768 (2)
CHEBI:15366 (2)
CHEBI:75342 (2)
CHEBI:27997 (2)
CHEBI:18183 (2)

Metabolite Name

Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Tris(2-butoxyethyl) phosphate (2)
L-isoleucine (2)
Glycine (2)
Putrescine (2)
Spermidine (2)
L-glutamic acid (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Methionine (2)
Elaidic acid (2)
Cholic acid (2)
3-hydroxypentanoic acid (1)
N6-acetyl-L-lysine (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
1-Hexadecanoyl-sn-glycerol (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
Alpha-TOCHOPHERYL ACETATE (1)
Homospermidine (1)
Norspermidine (1)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (1)
Etoposide (1)

First Public Date

2017 (396)
2026 (229)
2014 (206)
2025 (164)
2024 (129)
2013 (86)
2023 (83)
2021 (70)
2022 (64)
2018 (62)
2020 (57)
2019 (56)
2016 (34)
2015 (30)
2012 (1)
2010 (1)

Classification

bacteria (7)
viruses (4)
fungi (1)

Study type

RNA-seq of coding RNA (7)
Transcription profiling by array (5)
High-throughput sequencing (1)
DNA-seq (1)

Release Date

2025 (132)
2024 (107)
2021 (98)
2022 (97)
2023 (90)
2020 (73)
2018 (71)
2019 (65)
2017 (50)
2015 (41)
2016 (34)
2014 (24)
2026 (18)
2013 (17)
2010 (12)
2012 (12)
2011 (12)
2008 (2)
2009 (1)

Lab affiliation

University of Illinois Urbana-Champaign (2)
Center for Neurodegenerative Science, Van Andel Institute, Grand Rapids, MI, 49503 USA (1)
Dalhousie University (1)
Department of Biology,Watson Building 207, MS #52, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA (1)
Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Department of Geosciences Eberhard-Karls-University Tübingen Schnarrenbergstrasse 94-96 72076 Tübingen Germany (1)
Department of Microbiology and Immunology, Faculty of Pharmacy, Delta University for Science and Technology (1)
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH),Stockholm, Sweden (1)
Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Institute of Oceanology Chinese Academy of Sciences (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Luxembourg Centre for Systems Biomedicine (1)
Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Marine Chemistry and Geochemistry Woods Hole Oceanographic Institution (1)
Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, MA (1)
Microbial Ecology, Center for Applied Geoscience, University of Tuebingen, Germany (1)
Microbiology Department, The Ohio State University, United States of America (1)
Onstott Lab, Department of Geosciences, Princeton University (1)
Pratik Jagtap, Managing Director, Center for Mass Spectrometry and Proteomics, 43 Gortner Laboratory, 1479 Gortner Avenue, St. Paul, MN 55108 Phone: 612-624-9275 (1)
School of Biosciences, University of Birmingham (1)
System Ecology Group Luxembourg Centre for Systems Biomedicine University of Luxembourg Luxembourg (1)
Weizmann Institute of Science (1)
Woods Hole Oceanographic Institute Woods Hole, MA 02543 (1)

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Metatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran

Not available

ORGANISM(S): Mus musculus

ST001299 | MetabolomicsWorkbench

Raw Metatranscriptomic Reads

Raw Metatranscriptomic Reads_Raw sequence reads

PRJNA1506907 | ENA

soil metatranscriptomic

soil metatranscriptomic Raw sequence reads

PRJNA1092855 | ENA

Metatranscriptomic analysis of modified atmosphere packaged poultry meat

PRJEB26438 | ENA

Metatranscriptomic sequencing data from ampicillin pulse experiment

PRJEB109068 | ENA

Metatranscriptomic array analysis of “Candidatus Accumulibacter phosphatis”-enriched EBPR Sludge

Here we report a metatranscriptomic analysis of gene expression and regulation of “Candidatus Accumulibacter”-enriched lab-scale sludge during enhanced biological phosphorus removal (EBPR). Medium density oligonucleotide microarrays were generated with probes targeting most predicted genes hypothesi...

ORGANISM(S): Candidatus Accumulibacter phosphatis uncultured bacterium

2009-12-31 | GSE17857 | GEO

Gene finding in metatranscriptomic sequences.

Not available

S-EPMC4168707 | biostudies-literature

Human gut metatranscriptomic

Human gut metatranscriptomic Transcriptome

PRJNA1018112 | ENA

Metagenomic and metatranscriptomic data from freshwater-sediment microcosm experiments

Metagenomic and metatranscriptomic data from freshwater-sediment microcosm experiments Metagenome

PRJNA1333622 | ENA

Metagenomic and metatranscriptomic data from a growth chamber mesocosm