Mi Tao T - OmicsDI

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Unknown (115)
Transcriptomics (4)
Models (2)
Proteomics (2)
Metabolomics (1)

Organisms

Saccharomyces cerevisiae (2)
Chlamydomonas reinhardtii (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Mus musculus (1)
Homo sapiens (1)
Alphavirus (1)
Anemia (1)
Betaherpesvirinae (1)
Brassica oleracea var. oleracea (1)
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Cytomegalovirus (1)
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EFO:0001352 (1)
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Human immunodeficiency virus 1 (1)
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Nostoc sp. PCC 7120 = FACHB-418 (1)
Oropouche virus (1)
Orthopoxvirus (1)

Repository

biostudies-arrayexpress (4)
BioModels (2)
iProX (1)
MetaboLights (1)
pride (1)

Tissue

B cell (1)
Cell culture (1)

Disease

B-cell lymphoma (1)

Technology Type

Mass spectrometry (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Mass Spectrometry (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2005 (2)
2022 (2)
2014 (1)
2013 (1)
2008 (1)
2007 (1)
2018 (1)

CHEBI ID

CHEBI:191681 (1)
CHEBI:190913 (1)
CHEBI:191678 (1)
CHEBI:191676 (1)
CHEBI:165242 (1)
CHEBI:190870 (1)
CHEBI:191673 (1)
CHEBI:169510 (1)
CHEBI:191671 (1)
CHEBI:191666 (1)
CHEBI:190851 (1)
CHEBI:176106 (1)
CHEBI:191663 (1)
CHEBI:191660 (1)
CHEBI:191659 (1)
CHEBI:189030 (1)
CHEBI:191656 (1)
CHEBI:191471 (1)
CHEBI:191653 (1)
CHEBI:191422 (1)
CHEBI:191649 (1)
CHEBI:166768 (1)
CHEBI:191645 (1)
CHEBI:191642 (1)
CHEBI:191633 (1)
CHEBI:191630 (1)
CHEBI:191624 (1)
CHEBI:186790 (1)
CHEBI:191618 (1)
CHEBI:191615 (1)

Metabolite Name

Spinacetin 3-[p-coumaroyl-(->2)-glucosyl-(1->6)-[apiosyl-(1->2)]-glucoside] (1)
PS(14:0/18:3(9Z,12Z,15Z)) (1)
Gamma-Eudesmol rhamnoside (1)
5(S)-HEPE (1)
3,4,5-trihydroxy-6-[4-(3-hydroxybutyl)-2-methoxyphenoxy]oxane-2-carboxylic acid (1)
3,4,5-trihydroxy-6-(3-hydroxybenzoyloxy)oxane-2-carboxylic acid (1)
Cyanidin 3-(6''-(E)-p-coumarylsambubioside) 5-glucoside (1)
4-(4-Chlorophenyl)-1-[4-(4-fluorophenyl)-4-oxobutyl]-pyridinium (HPP+) (1)
Homostypolhydroperoxide (1)
Dehydroabietadienol (1)
Substance P (1)
Methyl 7,10,13-hexadecatrienoate (1)
3'-Dehydrolutein/ Philosamiaxanthin/ 3-Hydroxy-beta,epsilon-caroten-3'-one (1)
Alpha-Methylphenethyl butyrate (1)
3-(3,4-dihydroxyphenyl)-N-[2-(3,4-dihydroxyphenyl)ethyl]propanimidic acid (1)
Benzenemethanol, 2-(2-hydroxypropoxy)-3-methyl- (1)
Trans, trans-3,5-Octadien-2-one (1)
Zoapatanol (1)
Methyl-10-gingerol (1)
3,4,5-trihydroxy-6-(2-hydroxy-6-methoxyphenoxy)oxane-2-carboxylic acid (1)
5-hydroxy-7-methoxy-3-(3-methoxyphenyl)-8-methyl-4H-chromen-4-one (1)
2,3-dinor-8-iso-PGF2alpha (1)
D-(-)-quinic acid (1)
3,4,5-trihydroxy-6-{[3-(3-hydroxyphenyl)propanoyl]oxy}oxane-2-carboxylic acid (1)
Beta1-Tomatidine (1)
Meta-O-Dealkylated flecainide lactam (1)
Alpha-Solamarine (1)
CGMP (1)
Trans-isoeugenol-O-glucuronide (1)
Fucosyllactose (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (2)
RNA-seq of non coding RNA (2)

Release Date

2025 (17)
2022 (16)
2024 (15)
2021 (13)
2023 (9)
2020 (8)
2018 (7)
2019 (5)
2026 (4)
2017 (4)
2016 (4)
2014 (3)
2013 (3)
2008 (3)
2012 (3)
2007 (2)
2011 (2)
2015 (1)

Lab affiliation

Moffitt Cancer Center Tampa, FL, USA (1)

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Small RNAs in Chlamydomonas reinhardtii

RNA populations in Chlamydomonas reinhardtii Keywords: Highly parallel pyrosequencing Small RNAs were prepared from Chlamydomonas reinhardtii total extracts,ligated to a 3' adaptor and a 5' acceptor sequentially, and then RT-PCR amplified. PCR products were reamplified using a pair of 454 cloning pr...

ORGANISM(S): Chlamydomonas reinhardtii

2007-05-15 | E-GEOD-7308 | biostudies-arrayexpress

You2010_General_Yeast_mRNA_Translation

This the model from the article: A quantitative model for mRNA translation in Saccharomyces cerevisiae. You T, Coghill GM, Brown AJ. Yeast. 2010 Mar 19. epub ahead of print, PMID: 20306461 , doi: 10.1002/yea.1770 Ab...

2005-01-01 | MODEL8459127548 | BioModels

EphrinB2-mediated CDK5/ISL1 pathway enhances cardiac lymphangiogenesis and alleviates ischemic injury by resolving post-MI inflammation.

Not available

S-EPMC11574162 | biostudies-literature

Coexpression of VEGF and angiopoietin-1 promotes angiogenesis and cardiomyocyte proliferation reduces apoptosis in porcine myocardial infarction (MI) heart.

Not available

S-EPMC3033313 | biostudies-literature

Therapeutic IGF-I receptor inhibition alters fibrocyte immune phenotype in thyroid-associated ophthalmopathy.

Not available

S-EPMC8719891 | biostudies-literature

Small RNAs in four Argonaute complexes in Arabidopsis

The core components of RNA silencing effector complexes include small RNAs and members of the Argonaute (AGO) protein family. Arabidopsis encodes ten AGOs and complex population of small RNAs. It remains largely unknown how these small RNAs are recognized and recruited by each AGO complex. Here we p...

ORGANISM(S): Arabidopsis thaliana

2008-04-05 | E-GEOD-10036 | biostudies-arrayexpress

Inflammatory regulatory T cells in the microenvironments of ulcerative colitis and colon carcinoma.

Not available

S-EPMC5007964 | biostudies-literature

Unraveling T cell exhaustion in the immune microenvironment of osteosarcoma via single-cell RNA transcriptome.

Not available

S-EPMC10821851 | biostudies-literature

STIM1-mediated NFAT signaling synergizes with STAT1 to control T-bet expression and T<sub>H</sub>1 differentiation.

Not available

S-EPMC12121662 | biostudies-literature

Machine learning-based risk prediction model development for acute kidney injury in type 2 myocardial infarction patients.