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Transcriptomics (61809)
Unknown (34482)
Genomics (33616)
Proteomics (773)
Methylation profiling (289)
Other (224)
Metabolomics (111)
Models (49)
Microarray (40)
Genomic (27)
Multiomics (10)
Clinical (7)

Organisms

Homo sapiens (26813)
Mus musculus (16495)
Rattus norvegicus (2925)
Arabidopsis thaliana (2421)
Drosophila melanogaster (1602)
Saccharomyces cerevisiae (1376)
Danio rerio (683)
Caenorhabditis elegans (606)
Bos taurus (595)
Sus scrofa (560)
Oryza sativa (502)
Gallus gallus (463)
Escherichia coli (425)
Schizosaccharomyces pombe (297)
Zea mays (234)
Candida albicans (230)
Macaca mulatta (188)
Staphylococcus aureus (186)
Canis lupus familiaris (184)
Salmo salar (179)
Oncorhynchus mykiss (175)
Triticum aestivum (172)
Oryza sativa Japonica Group (148)
Pseudomonas aeruginosa (147)
Mycobacterium tuberculosis (146)
Glycine max (139)
Bacillus subtilis (77)
Amniota (1)
Ostreococcus tauri (1)
Octodon degus (1)

Organisms

Homo sapiens (12176)
Mus musculus (7726)
Rattus norvegicus (1322)
Arabidopsis thaliana (763)
Saccharomyces cerevisiae (513)
Drosophila melanogaster (378)
Danio rerio (318)
Bos taurus (251)
Sus scrofa (247)
Oryza sativa (231)
Caenorhabditis elegans (174)
Gallus gallus (169)
Escherichia coli (142)
Canis lupus familiaris (94)
Zea mays (74)
Plasmodium falciparum (73)
Oncorhynchus mykiss (70)
Macaca mulatta (66)
Candida albicans (65)
Solanum lycopersicum (63)
unidentified (62)
Staphylococcus aureus (59)
Oryza sativa Japonica Group (59)
Schizosaccharomyces pombe (57)
Glycine max (56)
Pimephales promelas (54)
Xenopus laevis (54)
Salmo salar (54)
Triticum aestivum (53)
Vitis vinifera (50)

Repository

biostudies-arrayexpress (45182)
ENA (29884)
geo (20466)
EGA (720)
pride (280)
MassIVE (101)
ExpressionAtlas (86)
MetaboLights (62)
GNPS (49)
BioModels (47)
NODE (41)
LINCS (30)
EVA (28)
dbGaP (27)
jPOST (27)
iProX (20)
PAXDB (17)
PeptideAtlas (15)
GPMDB (6)
PanoramaPublic (4)
Cell Collective (2)

Tissue

Blood (16)
Lung (12)
Liver (12)
Cell line (7)
Breast (5)
Hippocampus (4)
Commercial DNA standard (4)
Superior frontal gyrus (2)
Rectum (2)
Transverse colon (2)
Entorhinal cortex (2)
Spleen (2)
Ileal pouch (1)
Postcentral gyrus (1)
Left colon (1)
Descending colon (1)
Not collected (1)
Posterior cingulate cortex (1)
Temporal cortex (1)
Primary visual cortex (1)
Striatum (1)
Middle temporal gyrus (1)
Not available (1)
Caecum (1)
Ascending colon (1)
Terminal ileum (1)
Frontal cortex (1)
Sigmoid colon (1)
Ileum (1)
Adjacent tissue of colorectal cancer (1)

Disease

Normal (238)
Alzheimers disease (8)
Crohn's disease (3)
Parkinson's disease (3)
Unspecified peripheral T-cell lymphoma (2)
Postweaning multisystemic wasting syndrome (1)
Poorly differentiated hypernephroma (1)
AIDs related Burkitts lymphoma (1)
Adenocarcinoma prostate PC-3 subline isolated from liver metastasis in mice (1)
Adenocarcinoma of prostate (1)
Chronic myelogenous (blast crisis) leukemia (1)
Poorly differentiated B cell origin leukemia (1)
Acute lymphoblastic (T-ALL) leukemia (1)
Adenocarcinoma of lung (1)
Carcinoma, renal cell (1)
Malignant melanoma (1)
Adenocarcinoma of colon (1)
Metastatic malignant melanoma (1)
Adenocarcinoma, breast grown from mouse mammary fat pad (1)
Promyelocytic leukemia (1)
Malignant amelanocytic melanoma (1)
Large cell undifferentiated lung (1)
Adenocarcinoma HER2/ERBB2 transfectant of MDA-MB-435 melanoma (1)
Lymphoblastic Burkitt's lymphoma (1)
Secondary progressive multiple sclerosis (1)
Familial adenomatous polyposis (1)
Acute pouchitis (1)
Crohn’s disease-like phenotype (1)
Chronic pouchitis (1)
Angioimmunoblastic T-cell lymphoma (1)

Technology Type

Illumina HiSeq 2000 (10)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina (2)
Illumina Genome Analyzer II (2)
Illumina MiSeq, NextSeq 500, ILLUMINA (1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HT12.4 (1)
IlluminaHumanMethylationEPIC (1)
Illumina HumanExome Array (1)
Exiqon 7th generation miRCURY LNA microRNA microarray system (1)
Illumina Multi-EthnicGlobal_A1 (1)
OXFORD_NANOPORE, MinION (1)
Nanostring cancer pathway, Nanostring Cancer Immune, ILLUMINA, Affymetrix GeneChipÂ® Human Transcriptome Array 2.0, Illumina HiSeq 4000 (1)
Infinium_OmniExpress-24v1.0 (1)
Illumina HumanMethylation450K, Illumina HiSeq 2500, Illumina InfiniumCoreExome-24v1-1_A, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500, Illumina HumanMethylation450K, Illumina InfiniumCoreExome-24v1-1_A (1)
Illumina OncoArray (1)
Illumina Human Core Exome 12v1-1_a (1)
Illumina Exome 250K (1)
Illumina HumanCoreExome-12v1-0_A and HumanCoreExome-24v1-0_A, Illumina Human670-QuadCustom_v1_A (1)
Illumina HumanMethylation450 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina Human Core Exome 12v1.1 (1)
Illumina 450K-chip (methylation data) (1)
MeDIP-seq (1)
Illumina_450K, Illumina_HumanHT-12_V4, ILLUMINA, Illumina HiSeq 2000 (1)
Affymetrix 6.0, Illumina Infinium ImmunoChip (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, PacBio RS II (1)
Agilent 180K, Affymetrix GeneChip Human Exon 1.0 ST, Liquid chromatographyâ€“mass spectrometry, Illumina 1M SNP Array, Agilent SurePrint Human miRNA Microarray, Illumina HiSeq 2000, Agilent 244K, Agilent 44K, Illumina Genome Analyzer II (1)
Illumina HumanExome-12v1_A (1)

Instrument Platform

Scanning hardware (59)
BGISEQ-500 (55)
GenePix 4000B [Axon Instruments] (54)
Illumina HiSeq 2000 (54)
Axon GenePix 4000B scanning hardware (42)
DNBSEQ-T7 (41)
Illumina HiSeq 2500 (40)
Illumina NovaSeq 6000 (36)
Axon- GenePix4000B (32)
GenePix 4000A [Axon Instruments] (30)
G2565BA DNA microarray scanner [Agilent] (30)
NextSeq 500 (25)
418 [Affymetrix] (23)
Illumina HiSeq 4000 (23)
Agilent G2505B scanner (21)
G2565AA DNA microarray scanner [Agilent] (20)
Illumina Genome Analyzer IIx (20)
DNA Microarray Scanner BA [Agilent Technologies] (20)
Affymetrix GeneChip Scanner 3000 7G (19)
Other (18)
ArrayWoRx Biochip Reader [Applied Precision] (17)
ScanArray Express HT [PerkinElmer] (17)
Affymetrix Fluidics Station 400 (16)
Illumina MiSeq (16)
Agilent G2565AA and G2565BA Microarray Scanner (15)
ScanArray [PerkinElmer] (15)
GenePix Personal 4100A [Axon Instruments] (15)
ScanArray 5000 [PerkinElmer] (13)
ScanArray 4000XL [PerkinElmer] (13)
ScanArray Express HT (11)

Publication Date

2013 (7740)
2010 (7540)
2014 (6916)
2012 (6908)
2011 (6606)
2015 (5810)
2016 (3963)
2008 (3700)
2009 (3292)
2007 (2087)
2017 (1685)
2018 (1401)
2019 (1205)
2020 (1156)
2021 (1036)
2006 (971)
2022 (940)
2005 (893)
2023 (697)
2024 (516)
2025 (513)
2026 (366)
2004 (327)
2003 (107)
2002 (19)
2001 (4)

UNIPROT ID/AC

E0CSM0_VITVI (5)
F6HBY4_VITVI (5)
F6HF82_VITVI (5)
D7TDB6_VITVI (5)
D7UCJ5_VITVI (5)
A5B427_VITVI (5)
A5B9M3_VITVI (5)
F6H5L6_VITVI (5)
D7SKV3_VITVI (5)
A5BEM8_VITVI (5)
A5AR17_VITVI (5)
D7TWP2_VITVI (5)
F6H6C2_VITVI (5)
F6H0X1_VITVI (5)
Q15406 (2)
Q99626 (2)
Q92908 (2)
Q6ZRP7 (2)
Q8N7R0 (2)
Q01860 (2)
P04637 (2)
Q9Y2T1 (1)
O14640 (1)
Q8NES3 (1)
P35222 (1)
P46531 (1)
P49841 (1)
P13800 (1)
P04189 (1)
Q16828 (1)

ENSEMBL ID

ENSG00000170477 (4)
ENSMUSG00000027651 (3)
ENSG00000247315 (3)
ENSG00000147251 (3)
ENSMUSP00000141097 (3)
ENSG00000148200 (2)
ENSG00000165556 (2)
ENSG00000141448 (2)
ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000021039 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000072849 (2)
ENSMUSG00000098557 (2)
ENSG00000139318 (1)
ENSG00000168646 (1)
ENSMUSG00000103290 (1)
ENSMUSG00000096326 (1)
ENSMUSG00000095753 (1)
ENSMUSG00000095416 (1)
ENSMUSG00000094689 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094502 (1)

CHEBI ID

CHEBI:28865 (36)
CHEBI:15996 (33)
CHEBI:17552 (33)
CHEBI:3110 (32)
CHEBI:16874 (32)
CHEBI:16565 (32)
CHEBI:27515 (32)
CHEBI:36528 (32)
CHEBI:15958 (32)
CHEBI:17927 (32)
CHEBI:28101 (32)
CHEBI:17687 (32)
CHEBI:36274 (32)
CHEBI:16675 (32)
CHEBI:28058 (32)
CHEBI:17292 (32)
CHEBI:16091 (32)
CHEBI:28648 (32)
CHEBI:28175 (32)
CHEBI:18163 (32)
CHEBI:17798 (32)
CHEBI:17364 (32)
CHEBI:17474 (32)
CHEBI:27870 (32)
CHEBI:27910 (32)
CHEBI:17500 (32)
CHEBI:17737 (32)
CHEBI:15700 (32)
CHEBI:17123 (32)
CHEBI:17864 (32)

Metabolite Name

Tyrosine (10)
Leucine (8)
Glycine (8)
Citric acid (8)
Succinic acid (8)
Myo-inositol (8)
Valine (8)
Choline (8)
Isoleucine (8)
Glutamine (8)
Hypoxanthine (8)
Putrescine (7)
Fumaric acid (7)
2-oxoglutaric acid (7)
Uracil (7)
Prostaglandin J2 (7)
Ornithine (7)
L-serine (7)
Stearic acid (7)
Adenosine (7)
Spermidine (7)
Proline (7)
Phenylalanine (7)
Palmitic acid (7)
Glucose (7)
Adenine (7)
Xanthine (7)
Sucrose (7)
Creatinine (7)
Creatine (7)

First Public Date

2014 (15149)
2015 (1990)
2024 (1795)
2017 (1752)
2018 (1393)
2019 (1368)
2020 (1299)
2021 (1135)
2016 (1004)
2022 (904)
2023 (703)
2025 (562)
2013 (500)
2026 (310)
2012 (9)
2011 (7)
2010 (4)

Modelling Approach

Ordinary differential equation model (6)
Constraint-based model (6)
Other (1)
Metabolic network (1)

Study status

Completed (3)
Recruiting (2)
Not yet recruiting (1)
Not provided (1)

Lab affiliation

Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (9)
Montana State University (2)
Institute of Biochemistry, University of Kiel (2)
Food Safety Centre, Tasmanian Institute of Agriculture, University of Tasmania, Hobart, Tasmania, Australia (2)
Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (2)
University of Arkansas for Medical Sciences (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchatel, Switzerland (2)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (2)
Ph.D., Professor, Vice Dean (2)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (2)
Research Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria (2)
University of Wyoming (2)
Alkahest Inc. (2)
Institute of Science and Technology Austria (ISTA) (2)
BK21 FOUR Community-Based Intelligent Novel Drug Discovery Education Unit, College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD (2)
IRCCS Istituto G Gaslini (2)
Systems Biology Ireland, University College Dublin (2)
Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS USA (1)
Dept. of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University (1)
Department of Developmental, Molecular and Chemical Biology Tufts University School of Medicine Boston MA 02111 (1)
Dept. Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Victoria 3086, Australia. (1)
Harvard Medical School Beth Israel Deaconess Medical Center Director, HMS Center for Glycoscience Director, National Center for Functional Glycomics CLS 11087 - 3 Blackfan Circle Boston, MA 02115, USA (1)
Department of Biological Chemistry, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA (1)
Departments of Radiation Oncology, The University of Michigan Medical School, Ann Arbor, Michigan 48109. (1)
University of Texas at Austin (1)
Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA (1)
Department of Animal Sciences, Robert H. Smith Faculty of Agriculture, Food and Environment, the Hebrew University, Rehovot 76100, Israel Center of Excellence in Agriculture and Environmental Health, the Hebrew University, Rehovot 76100, Israel (1)
National Taiwan University, Institute of Molecular & Cellular Biology (1)

Keyword

GWAS (1)
Microarray (1)
Tumour Regression Grade (1)
CRM (1)
Circumferential Resection Margin (1)
Radiology (1)
EMVI (1)
Extramural Venous Invasion (1)
MrEMVI (1)
Tumor heterogeneity (1)
Tumor evolution (1)
Curcumin (1)
Biomarker (1)
MRI (1)
Targeted therapy (1)
Pathology (1)
Rectal Cancer (1)
Chemotherapy (1)

IsPrivate

False (47)

Model Flag

Non Kinetic (34)

Submitter Keywords

FROG (3)

Classification

bacteria (1052)
fungi (191)
protozoa (163)
helminths (33)
viruses (26)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (36835)
Comparative genomic hybridization by array (1608)
ChIP-chip by tiling array (1101)
Unknown experiment type (1002)
Methylation profiling by array (843)
RNA-seq of coding RNA (507)
ChIP-seq (427)
Other (343)
Transcription profiling by tiling array (341)
ChIP-chip by array (312)
MicroRNA profiling by array (286)
Genotyping by array (281)
Transcription profiling by RT-PCR (220)
Proteomic profiling by array (175)
DNA-seq (114)
RNA-seq of non coding RNA (107)
RNAi profiling by array (86)
Animal - One-color microarray (64)
Methylation profiling by high throughput sequencing (64)
Cell line - One-color microarray (51)
Human - One-color microarray (48)
RNA-seq of coding RNA from single cells (25)
One-color microarray (22)
Human - Two-color microarray (14)
Plant - One-color microarray (13)
Cell line - High-throughput sequencing (13)
Antigen profiling (13)
Cell line - Two-color microarray (12)
Transcription profiling by SAGE (10)
RIP-chip by array (10)

Release Date

2013 (7982)
2010 (7816)
2014 (7391)
2012 (7200)
2011 (6891)
2015 (6372)
2016 (5250)
2008 (3881)
2009 (3528)
2021 (2483)
2022 (2435)
2020 (2390)
2017 (2388)
2019 (2166)
2018 (2157)
2007 (2110)
2023 (1770)
2024 (1144)
2025 (1102)
2006 (1087)
2005 (1025)
2004 (439)
2003 (219)
2026 (203)
2002 (123)
2001 (65)
2000 (16)
1999 (4)
1998 (2)

Location

New Zealand (1)
India (1)
Sweden (1)
Netherlands (1)
United States (1)
United Kingdom (1)
Japan (1)

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One-dimensional capillary liquid chromatographic separation coupled with tandem mass spectrometry unveils the Escherichia coli proteome on a microarray scale.

We successfully identified the proteome expressed in Escherichia coli (E. coli) cells on a microarray scale using one-dimensional capillary liquid chromatography-tandem mass spectrometry (LC-MS/MS) with a 350 cm long, 100 microm i. d., monolithic silica-C(18) capillary column. E. coli tryptic digest...

ORGANISM(S): Escherichia Coli

2016-07-20 | PXD004605 | JPOST Repository

KILchip v1.0: A novel Plasmodium falciparum merozoite protein microarray to facilitate malaria vaccine candidate prioritization7

Passive transfer studies in humans clearly demonstrated the protective role of IgG antibodies against malaria. Identifying the precise parasite antigens that mediate immunity is essential for vaccine design, but has proved difficult. Completion of the Plasmodium falciparum genome revealed thousands ...

ORGANISM(S): Plasmodium falciparum (isolate 3D7)

2021-02-12 | PXD011724 | Pride