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MetabolomicsCore microbes are ecological generalists supporting the host and ecosystem functionality and stability
Core gut microbes persist across diverse gut ecosystems, raising the central question in microbiome research of what defines core microbes and the factors driving their persistence across hosts? Using the rumen microbiome as a model system, our study reveals that core microbes exhibit distinct attri...
2025-05-23 | MTBLS11446 | MetaboLights
ProteomicsProteome data on soil microbial community
Soil microbial community is a complex blackbox that requires a multi-conceptual approach (Hultman et al., 2015; Bastida et al., 2016). Most methods focus on evaluating total microbial community and fail to determine its active fraction (Blagodatskaya & Kuzyakov 2013). This issue has ecological conse...
ORGANISM(S): Escherichia coli 
2021-02-02 | PXD005447 | Pride
Metaproteomics Soil Microbial community 
MetabolomicsThe stability and functional redundancy of a microbial cheese ecosystem subjected to a biotic perturbation
The cheese microbial community is dense with relatively low complexity and composed of cultivable prokaryotic and eukaryotic microorganisms. The ripening process can thus be reproduced under controlled conditions. A reduced microbial community composed of yeasts and bacteria was assembled to mimic t...
2024-04-29 | MTBLS6968 | MetaboLights
ProteomicsMicrobial functionality as affected by experimental warming of a temperate mountain forest soil - a metaproteomics survey
Soils are a huge reservoir of organic C, and the efflux of CO2 from soils is one of the largest fluxes in the global C cycle. Out of all natural environments, soils probably contain the greatest microbial biomass and diversity, which classifies them as one of the most challenging habitats for microb...
ORGANISM(S): uncultured soil microorganism 
2022-03-14 | PXD004428 | Pride
Soil microbial diversity Microbial community functionality Soil warming 
MetabolomicsMicrobial metabolites calibrate innate immunity upon systemic viral infection

Gut microbiome dysbiosis is often associated with immune-mediated diseases. Here, we used germ-free (GF) mice, the synthetic minimal consortium OMM12, and specific pathogen-free (SPF) mice to dissect the causal influence of the microbiome on anti-viral immunity. The lack of microbial diversity af...

2026-08-01 | MTBLS7382 | MetaboLights
ProteomicsA metaproteomic analysis of the response of a freshwater microbial community under nutrient enrichment
Eutrophication can lead to an uncontrollable increase in algal biomass, which has repercussions for the entire microbial and pelagic community. Studies have shown how nutrient enrichment affects microbial species succession, however details regarding the impact on community functionality are rare. H...
ORGANISM(S): mixed sample 
2016-08-01 | PXD004592 | Pride
Eutrophic Lc-msms Freshwater Oligotrophic Microbial loop Metaproteomics 
TranscriptomicsEffects of Gut Microbiota Manipulation by Antibiotics on Host Metabolism in Obese Humans: a Randomized Double-blind Placebo-controlled Trial
The gut microbiota has been implicated in obesity and cardiometabolic diseases, although evidence in humans is scarce. We investigated how gut microbiota manipulation by antibiotics (7-day administration of amoxicillin, vancomycin, or placebo) affects host metabolism in 57 obese, prediabetic men. Va...
ORGANISM(S): Homo sapiens 
2016-07-15 | E-GEOD-76003 | biostudies-arrayexpress
UnknownSoil microbial community structure and functionality changes in response to long-term metal and radionuclide pollution.
Not available
S-EPMC8048617 | biostudies-literature
ProteomicsProteotyping of microbial communities reveals the correlations between the microorganisms and the process parameters
Background: Methane yield and biogas productivity of biogas plants depend on microbial community structure and functionality, substrate supply, and general process parameters. Little is known, however, about the correlations between microbial community function and the process parameters. To close t...
ORGANISM(S): Acyrthosiphon pisum (Pea aphid) 
2016-04-19 | PXD003526 | Pride
Biogas plant Biogas Anaerobic digestion Complex microbial community 
UnknownAgulhas Current properties shape microbial community diversity and potential functionality.
Not available
S-EPMC6043601 | biostudies-literature
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