Mini-model - OmicsDI

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Unknown (1252)
Transcriptomics (1056)
Genomics (449)
Proteomics (39)
Metabolomics (16)
Clinical (3)
Other (3)
Genomic (1)
Methylation profiling (1)

Organisms

Mus musculus (700)
Homo sapiens (205)
Rattus norvegicus (29)
Arabidopsis thaliana (22)
Oryza sativa (10)
Saccharomyces cerevisiae (7)
Rhizobium leguminosarum (6)
Drosophila melanogaster (6)
Zea mays (6)
Danio rerio (5)
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Ovis aries (3)
Pseudomonas aeruginosa (3)
Equus caballus (3)
Oncorhynchus mykiss (3)
Sus scrofa (3)
Bacteroides thetaiotaomicron (2)
Bifidobacterium longum (2)
Xenopus laevis (2)
Porphyromonas gingivalis (2)
Citrus sinensis (2)
Mesocricetus auratus (2)
Caenorhabditis elegans (2)
Candida albicans (2)

Organisms

Mus musculus (155)
Homo sapiens (114)
Rattus norvegicus (28)
Arabidopsis thaliana (8)
Pyricularia oryzae (5)
Drosophila melanogaster (5)
Oncorhynchus mykiss (4)
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Ovis aries (2)
Sus scrofa (2)
Pseudomonas aeruginosa (2)
Danio rerio (2)
Cronobacter turicensis (1)
Populus trichocarpa x Populus deltoides (1)
Trypanosoma brucei brucei (1)
Carassius auratus auratus (1)
Neurospora crassa OR74A (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Populus tremula x Populus alba (1)
Epinephelus coioides (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Brachypodium distachyon (1)
Neurospora crassa (1)
urogenital metagenome (1)
Campylobacter jejuni (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Medicago truncatula (1)

Repository

biostudies-arrayexpress (1031)
ENA (404)
geo (70)
pride (31)
MetaboLights (16)
MassIVE (6)
EGA (4)
iProX (4)
dbGaP (1)
NODE (1)

Tissue

Cell culture (8)
Blood (4)
Epithelial cell (3)
Spleen (2)
Heart (1)
Long bone (1)
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Urine (1)
Neuron (1)
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Liver (1)
T cell (1)

Disease

Breast cancer (3)
Normal (2)
Huntington Disease (2)
Cytomegalovirus seropositive (1)
SMARD1 (1)
B. dendrobatidis infection (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
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Healthy (1)
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SS2-infected (1)
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Carcinoma (1)
Colorectal Cancer (1)
Dilatation of the ascending aorta (1)
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Glioblastoma (1)

Technology Type

Mass Spectrometry (31)
Shotgun proteomics (16)
Mass spectrometry (10)
Bottom-up proteomics (9)
Data-dependent acquisition (5)
Mass spectrometry assay (3)
NMR spectroscopy (2)
DiaPASEF (2)
SWATH MS (2)
Data-independent acquisition (2)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip (1)
NMR spectroscopy assay (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (17)
Illumina HiSeq 4000 (15)
NextSeq 500 (15)
Illumina HiSeq 2500 (11)
NextSeq 2000 (6)
Illumina HiSeq 2000 (6)
GenePix Professional 4200A [Axon Instruments] (3)
FS450 (2)
Not applicable (2)
GCS3000 (2)
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NextSeq 550 (2)
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Qubit 4.0 and TapeStation (1)
Element AVITI (1)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Messenger RNA was purified from total RNA using poly-T oligo-attached magnetic beads. After fragmentation, the first strand cDNA was synthesized using random hexamer primers followed by the second strand cDNA synthesis. The library was ready after end repair, A-tailing, adapter ligation, size selection, amplification, and purification. The library was checked with Qubit and real-time PCR for quantification and bioanalyzer for size distribution detection. (1)
Agilent Bioanalyzer 2100 (Agilent Technologies, USA). (1)
Not Appliciable (1)
Clariom S Mouse (1)
MacBook Pro 64Gb RAM; 16-core (1)
Qubit 2.0 Fluorometer; Agilent TapeStation 4200 (1)
Computer (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)

Publication Date

2015 (145)
2014 (144)
2013 (128)
2012 (111)
2011 (107)
2010 (101)
2016 (89)
2008 (46)
2009 (41)
2022 (29)
2026 (25)
2025 (25)
2021 (25)
2017 (24)
2020 (19)
2023 (18)
2019 (17)
2007 (17)
2024 (16)
2018 (15)
2005 (7)
2004 (4)
2006 (3)

CHEBI ID

CHEBI:17822 (4)
CHEBI:18257 (4)
CHEBI:24898 (4)
CHEBI:28875 (4)
CHEBI:15428 (4)
CHEBI:6650 (4)
CHEBI:15891 (4)
CHEBI:15354 (4)
CHEBI:17351 (4)
CHEBI:28822 (3)
CHEBI:30805 (3)
CHEBI:16450 (3)
CHEBI:16856 (3)
CHEBI:18237 (3)
CHEBI:15356 (3)
CHEBI:17126 (3)
CHEBI:16811 (3)
CHEBI:28300 (3)
CHEBI:16708 (3)
CHEBI:17748 (3)
CHEBI:16977 (3)
CHEBI:28842 (3)
CHEBI:16958 (3)
CHEBI:15741 (3)
CHEBI:28044 (3)
CHEBI:30746 (3)
CHEBI:17821 (3)
CHEBI:17154 (3)
CHEBI:16196 (3)
CHEBI:17568 (3)

Metabolite Name

Choline (4)
Uracil (4)
5-Hydroxy-L-tryptophan (4)
Ornithine (4)
Taurine (4)
Adenine (4)
Thymidine (4)
Creatine (4)
Floionolic acid (3)
Prostaglandin F1a (3)
Creatine (3)
O-Succinyl-L-homoserine (3)
L-Proline (3)
Zingerone (3)
Succinic acid (3)
12-Hydroxydodecanoic acid (3)
Cis-Aconitic acid (3)
Citric acid (3)
Stearic acid (3)
Caprylic acid (3)
Spermidine (3)
Cytosine (3)
2-Hydroxycinnamic acid (3)
Arachidic acid (3)
Uric acid (3)
Alpha-D-Glucose (3)
Cytidine (3)
Creatinine (3)
Glycerophosphocholine (3)
L-Methionine (3)

First Public Date

2014 (68)
2024 (52)
2025 (42)
2022 (40)
2023 (32)
2019 (28)
2020 (27)
2026 (26)
2021 (26)
2017 (21)
2018 (15)
2016 (12)
2015 (9)
2013 (5)
2011 (1)

Classification

bacteria (9)
protozoa (1)

Study status

Completed (2)
Recruiting (1)

Study type

Transcription profiling by array (768)
RNA-seq of coding RNA (146)
ChIP-seq (24)
Unknown experiment type (10)
Methylation profiling by high throughput sequencing (10)
Other (9)
Comparative genomic hybridization by array (8)
RNA-seq of non coding RNA (8)
Transcription profiling by RT-PCR (6)
Animal - High-throughput sequencing (4)
Methylation profiling by array (4)
RNA-seq of coding RNA from single cells (4)
RNA-seq of total RNA (4)
Cell line - High-throughput sequencing (3)
Animal - One-color microarray (2)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Genotyping by array (2)
MicroRNA profiling by array (2)
DNA-seq (2)
Genotyping by high throughput sequencing (2)
Observational (2)
Transcription profiling by SAGE (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
ScATAC-seq (1)
Interventional (1)

Release Date

2025 (193)
2022 (186)
2015 (178)
2014 (158)
2023 (156)
2024 (141)
2013 (141)
2021 (130)
2012 (125)
2011 (116)
2016 (110)
2010 (110)
2020 (108)
2019 (91)
2018 (78)
2017 (71)
2008 (55)
2009 (50)
2026 (42)
2007 (22)
2005 (10)
2006 (4)
2004 (4)
2002 (2)
1999 (1)

Lab affiliation

Medical Mycology Laboratory, Department of Biology, Maynooth University, Co. Kildare, Ireland. (2)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (2)
Department of Oncology-Pathology, Karolinska Institutet (1)
King's British Heart Foundation Centre, King's College London, London, UK (1)
Department of Biology, Maynooth University, Co. Kildare, Ireland. (1)
Faculty of Science, Charles University, BIOCEV, Průmyslová 595, Vestec, 252 50 Czech Republic (1)
Shenyang Agriculture University (1)
Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford (1)
Institute for Plant Biochemistry and Photosynthesis Department of Computer Science and Artificial Intelligence University of Seville Spain (1)
University of Virginia School of Medicine (1)
Department of Pharmacy, Baotou Medical College, Baotou, Inner Mongolia, China (1)
Biomolecular Mass Spectrometry and Proteomics group, Utrecht University, The Netherlands (1)
Medical Mycology Laboratory, Department of Biology, Maynooth University (1)
Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University (1)
Technology and development department, Centro de Referencia para Lactobacillus (CERELA-CONICET), San Miguel de Tucumán, Tucumán, Argentina (1)
Department of Cancer and Inflammation Research, Institute of Molecular Medicine, University of Southern Denmark, DK-5000 Odense C, Denmark (1)
Mass Spectrometry & Proteomics Lab Department of Biotechnology, University of Verona Strada le Grazie 15, 37134 Verona, Italy (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen (1)
Medical Mycology Laboratory, Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Medical Mycology Unit, Department of Biology, Maynooth University, Maynooth, Co. Kildare (1)
Institute of Virology Medical University of Innsbruck Schöpfstraße 41 6020 Innsbruck, Austria (1)
SQY Therapeutics, 2 Av. de la Source de la Bièvre, 78180 Montigny-le-Bretonneux, France Université de Versailles St- Quentin, U1179 INSERM, UFR des Sciences de la Santé - LIA BAHN CSM, France. (1)
university of Edinburgh (1)
Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, the Netherlands (1)
Current: Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, The Netherlands; Previous: Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland (1)
The University of Edinburgh (1)
Department of Biology, Maynooth University, Co. Kildare, Ireland. Phone: + 353 - 1- 708 3859. Fax: + 353 - 1- 708 3845. (1)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (1)
National Instiute of Standards and Technology, Charleston, SC, USA (1)

Location

China (1)
Australia (1)
France (1)

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Segregation of naturally occurring mitochondrial DNA variants in a mini-pig model

We have generated a mini-pig model to study the transmission of naturally occuring mitochondrial DNA variants. To determine the chromosomal genotype of the model's founders, we have used the Illumina PorcineSNP60 v2 BeadChip.

ORGANISM(S): Sus scrofa

2017-09-01 | GSE73276 | GEO

Jan and mini-Jan, a model system for potato functional genomics.

Not available

S-EPMC11933877 | biostudies-literature

Development of a mini pig model of peanut allergy.

Not available

S-EPMC10894917 | biostudies-literature

Jan and mini-Jan, a model system for potato functional genomics.

Not available

S-EPMC11661178 | biostudies-literature

Sus scrofa