Mishra L L - OmicsDI

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Unknown (1391)
Transcriptomics (61)
Proteomics (25)
Genomics (17)
Metabolomics (3)

Organisms

Homo sapiens (42)
Mus musculus (31)
Rattus norvegicus (3)
Oryza sativa (2)
Nicotiana tabacum (2)
Pseudomonas aeruginosa PAO1 (2)
Solanum lycopersicum (2)
Arabidopsis thaliana (2)
Labeo rohita (1)
environmental samples (1)
Gossypium hirsutum (1)
Brassica juncea (1)
Plasmodium berghei (1)
mixed sample (1)
Anas platyrhynchos (1)
Triticum aestivum (1)
Gallus gallus (1)
Drosophila melanogaster (1)
Cajanus cajan (1)
Rattus rattus (1)
Saccharomyces cerevisiae (1)
Streptococcus mutans serotype C (1)

Repository

biostudies-arrayexpress (66)
pride (21)
EGA (10)
MassIVE (4)
MetaboLights (3)
ENA (2)

Tissue

Skeletal muscle (3)
Cell culture (2)
Myotube (2)
Permanent cell line cell (2)
Primary cell (2)
Blood cell (1)
Blood plasma (1)
Dendritic cell (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Epithelial cell (1)
Extracellular vesicle (1)
Feces (1)
Leaf (1)
Lung (1)
Melanocyte (1)
Myoblast (1)
Neural tissue (1)
Protoplast (1)
Root (1)
Skeletal muscle tissue (1)
Skin (1)

Disease

Acute myeloid leukemia (2)
Skeletal muscle atrophy (2)
Colorectal cancer (1)
Non-diabetic (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Disease free (1)
Liver cirrhosis (1)
Neurodegenerative disease (1)
Parkinson's disease (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (13)
Bottom-up proteomics (6)
Mass spectrometry (3)
Data-dependent acquisition (2)
Gel-based experiment (2)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
All-ion fragmentation (1)

Instrument Platform

Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer IIx (1)
NextSeq 550 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - negative - reverse phase (1)
MS Imaging - (1)

Publication Date

2013 (12)
2014 (11)
2015 (9)
2016 (7)
2012 (7)
2022 (5)
2021 (5)
2025 (5)
2026 (4)
2020 (4)
2011 (4)
2023 (4)
2010 (3)
2007 (3)
2024 (3)
2018 (2)
2009 (2)
2008 (2)
2017 (1)
2019 (1)

CHEBI ID

CHEBI:10565 (1)
CHEBI:136772 (1)
CHEBI:137481 (1)
CHEBI:137501 (1)
CHEBI:137515 (1)
CHEBI:137977 (1)
CHEBI:139241 (1)
CHEBI:139294 (1)
CHEBI:153572 (1)
CHEBI:15927 (1)
CHEBI:15929 (1)
CHEBI:16065 (1)
CHEBI:16220 (1)
CHEBI:16235 (1)
CHEBI:16323 (1)
CHEBI:16464 (1)
CHEBI:16673 (1)
CHEBI:16741 (1)
CHEBI:167531 (1)
CHEBI:167538 (1)
CHEBI:167540 (1)
CHEBI:16914 (1)
CHEBI:17381 (1)
CHEBI:17488 (1)
CHEBI:176098 (1)
CHEBI:17814 (1)
CHEBI:17964 (1)
CHEBI:18026 (1)
CHEBI:18305 (1)
CHEBI:183515 (1)

Metabolite Name

(20S,24S)-Thornasterol B (1)
(7Z,10Z,13Z,16Z,19Z)-3-oxodocosapentaenoyl-CoA (1)
1,25-Dihydroxycholesterol (1)
1-Fluoro-25-hydroxy-16-ene-23-yne-26,27-hexadeuterovitamin-D3 (1)
1-O-(4-Coumaroyl)-beta-D-glucose (1)
1-O-[3'''-sulfo-beta-D-Galactosyl-1'''-6''-alpha-D-Mannosyl-1''-2'-alpha-D-Glucosyl]-sn-2,3-di-O-phytanylglycerol (1)
1-Octadecylglycerol (1)
11-methoxy-12,13-epoxy-9-octadecenoic acid (1)
18-oxo-nonadecanoic acid (1)
1alpha,25-dihydroxy-2beta-(6-hydroxyhexyl)cholecalciferol (1)
1alpha-hydroxy-22-oxacholecalciferol (1)
2,5-dihydroxybenzoic acid 5-O-beta-D-glucoside (1)
2-O-acetylsalicin (1)
24,24-difluoro-1alpha,25-dihydroxy-24a-homocholecalciferol (1)
3'-O-Methylderhamnosylmaysin (1)
3-Deoxyvitamin D3 (1)
3-Hydroxyhexdecanedioyl-CoA (1)
3-dihydroxybenzoic acid (1)
30-(-2-(O-2-hydroxy-ethane)-3-hydroxy-propane)-hopane (1)
35-aminobacteriohopane-32,33,34-triol (1)
3beta-Hydroxy-6-oxo-5beta-cholan-24-oic Acid (1)
4'-O-methylalpinumisoflavone (1)
4-Hydroxybenzoate-O-glucoside (1)
4-heptyl-2-methyl-2-undecenoic acid (1)
5-Carboxypyranopelargonidin 3-O-β-glucopyranoside (1)
5-Oxo-ETE-d7 (1)
5-hydroxyconiferyl alcohol derivative (1)
6-Ac-Glc-GP(18:0/20:0) (1)
7-O-Methylnaringenin-7-furanosyl-(1-6)-glucopyranoside (1)
8,8-Dimethyl-2-phenyl-4H,8H-benzo[1,2-b:3,4-b']dipyran-4-one (1)

First Public Date

2021 (1)
2019 (1)

Study type

Transcription profiling by array (38)
RNA-seq of coding RNA (6)
ChIP-seq (4)
Comparative genomic hybridization by array (3)
Other (3)
MicroRNA profiling by array (3)
Cell line - Two-color microarray (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2025 (199)
2022 (175)
2023 (165)
2021 (145)
2024 (140)
2020 (123)
2018 (76)
2019 (75)
2017 (68)
2016 (53)
2014 (45)
2015 (43)
2013 (37)
2026 (27)
2012 (26)
2011 (17)
2010 (11)
2008 (10)
2007 (8)
2009 (7)
2006 (2)
2003 (2)
2001 (2)
2005 (1)

Lab affiliation

Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (3)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (2)
Aalborg university (1)
COld Spring Harbor Laboratory (1)
Chemistry Department, University of Minnesota (1)
Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada (1)
Head of the Department, Proteomics Core (1)
ICAR-National Institute for Plant Biotechnology, Pusa Campus, New Delhi, India -110012 (1)
Institute of Physiology II Universität Freiburg Germany (1)
Laboratory of Developmental biology, Disease Networks Research Unit, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland (1)
Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA (1)
Page and William Black Professor of Neurology Vice-Chair, Research Chief, Movement Disorders Division Director, Columbia Translational Neuroscience Initiative Co-Director, Center for Motor Neuron Biology and Disease Co-Director, Thompson Family Foundation Initiativ Departments of Neurology, Pathology & Cell Biology and Neuroscience College of Physicians and Surgeons, Room 5-420 630 West 168th Street Columbia University New York, NY 10032 Phone: 212-342-4119 Fax: 212-342-4512 (1)
Research Unit of Translational Medicine, University of Oulu, Biocenter Oulu, University of Oulu, Oulu, Finland (1)
Stanford (1)
Stanford Cancer Institute, Stanford University (1)
Stanford University (1)
University of Florida, Department of Oral Biology (1)
ZEA-3 Analytics, Forschugnszentrum Jülich (1)

Tags

xref:EuropePMC:PMC7802970 (1)

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The Impacts of Sortase A and the 4'-Phosphopantetheinyl Transferase Homolog Sfp on Streptococcus mutans Extracellular Membrane Vesicle Biogenesis

Extracellular membrane vesicles (EMVs) are produced by many Gram-positive organisms, but information regarding vesiculogenesis is incomplete. We used single gene deletions to evaluate the impacts on Streptococcus mutans EMV biogenesis of Sortase A (SrtA), which affects S. mutans...

2021-10-06 | MTBLS1812 | MetaboLights

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Comparative transcriptome profiles of cotton (G. hirsutum L. cv. Bikaneri narma) during boll development stages under bollworm infested biotic stress

Comparative transcriptome profiles of cotton (G. hirsutum L. cv. Bikaneri narma) during boll development stages (0, 2, 5 and 10 dpa) under bollworm infested biotic stress. Cotton is one of the most commercially important fibre crops in the world and used as a source for natural textile fibre and cot...

ORGANISM(S): Gossypium hirsutum

2015-03-01 | E-GEOD-55511 | biostudies-arrayexpress

Stereoselective Amine-omics Using Heavy Atom Isotope Labeled l- and d-Marfey's Reagents.

Not available

S-EPMC11160435 | biostudies-literature

l‑Proline-Carboxylic Acid-Based Hydrophobic Deep Eutectic Solvents: Thermophysical Properties and DFT Structural Insights.

Not available

S-EPMC12368678 | biostudies-literature

Simultaneous Quantification of Multiple Polycyclic Aromatic Hydrocarbons in Aqueous Media using Micelle Assisted White Light Excitation Fluorescence.

Not available

S-EPMC7265557 | biostudies-literature

Microbiology Profile of COVID-19-Associated Rhino-Orbital Mucormycosis Pathogens in South India.