Mitochondrion - OmicsDI

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Unknown (1722)
Transcriptomics (958)
Genomics (614)
Proteomics (355)
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Other (2)

Organisms

Homo sapiens (407)
Mus musculus (341)
Arabidopsis thaliana (69)
Saccharomyces cerevisiae (41)
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Drosophila melanogaster (24)
Danio rerio (20)
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Caenorhabditis elegans (16)
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Eukaryota (1)

Organisms

Homo sapiens (28)
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Eleutheronema rhadinum (2)
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Caenorhabditis elegans (2)
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Cyanidioschyzon merolae (2)
Rattus norvegicus (2)
Monocercomonoides exilis (1)
Colletes collaris (1)
Amazona leucocephala (1)
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Eudiscopus denticulus (1)

Repository

biostudies-arrayexpress (930)
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pride (103)
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geo (80)
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Tissue

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Sarcoma (1)
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N/a (1)
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Type 1 diabetes mellitus (DM-1) (1)
Acute leukemia (1)
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Technology Type

Mass Spectrometry (103)
Shotgun proteomics (66)
Mass spectrometry (60)
Mass spectrometry assay (23)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-independent acquisition (6)
NMR spectroscopy (5)
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Gel-based experiment (4)
SWATH MS (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Top-down proteomics (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Metaproteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (15)
Illumina NovaSeq 6000 (14)
Illumina HiSeq 2000 (14)
NextSeq 550 (12)
Illumina HiSeq 2500 (12)
Illumina HiSeq 4000 (9)
Affymetrix GeneChip(R) HT Scanner (6)
Illumina HiSeq 1500 (5)
Illumina NovaSeq X (4)
NextSeq 2000 (4)
Illumina HiSeq 3000 (4)
NA (3)
Element AVITI (2)
10X Genomics Chromium (2)
Generation III Array Scanner [Amersham] (2)
Axon GenePix 4000B scanning hardware (2)
Illumina HiSeq 1000 (2)
Illumina MiSeq (2)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
Qsep400 (1)
Qubit fluorometer (1)
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Protocol computer workstation running R statistical software (1)
Thermal cycler (PCR); Covaris ME220 focused ultrasonicator; magnetic separation rack; Agilent TapeStation system (D5000 and D1000 ScreenTape assays); Qubit fluorometer or equivalent; microcentrifuge. (1)
JANUS® G3 MDT automated liquid handling workstation (PerkinElmer); thermal cycler or incubator (42 °C); Zymo DNA Clean & Concentrator columns; AMPure XP magnetic bead purification system; magnetic separation rack. (1)
Multichannel pipettes or automated liquid handler; 384-well tissue culture plates; Class II biological safety cabinet; CO₂ incubator (37 °C, 5% CO₂). (1)
HIVE computer cluster (1)
Bio-Rad T100 Thermocycler (1)
Chromium Controller (10X Genomics) (1)

Publication Date

2010 (118)
2015 (115)
2013 (95)
2011 (92)
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2009 (52)
2020 (47)
2019 (47)
2026 (43)
2018 (31)
2007 (27)
2017 (26)
2006 (21)
2005 (12)
2004 (7)

UNIPROT ID/AC

P10515 (2)
P01275 (2)
Q96G03 (2)
P54840 (2)
Q16822 (2)
Q15181 (2)
P17858 (2)
P35557 (2)
O75390 (2)
P11168 (2)
P16118 (2)
P05062 (2)
P00338 (2)
P07195 (2)
O00330 (2)
P09622 (2)
P07864 (2)
P04406 (2)
P01308 (2)
P30613 (2)
P36871 (2)
P06744 (2)
P06733 (2)
P09104 (2)
P13929 (2)
O00757 (2)
P09467 (2)
P35575 (2)
P35558 (2)
Q16851 (2)

CHEBI ID

CHEBI:30769 (22)
CHEBI:32816 (20)
CHEBI:16027 (17)
CHEBI:15422 (15)
CHEBI:16761 (15)
CHEBI:15351 (14)
CHEBI:16908 (13)
CHEBI:18066 (12)
CHEBI:44897 (11)
CHEBI:17552 (11)
CHEBI:422 (10)
CHEBI:15346 (10)
CHEBI:4170 (9)
CHEBI:30744 (9)
CHEBI:15996 (9)
CHEBI:4167 (8)
CHEBI:17659 (8)
CHEBI:16526 (3)
CHEBI:18357 (2)
CHEBI:15713 (2)
CHEBI:16077 (2)
CHEBI:28087 (2)
CHEBI:15377 (2)
CHEBI:24636 (2)
CHEBI:29052 (2)
CHEBI:28602 (2)
CHEBI:17835 (2)
CHEBI:17794 (2)
CHEBI:16001 (2)
CHEBI:16905 (2)

Metabolite Name

Creatine (15)
Inosine (14)
ATP (13)
Glycine (13)
Uridine (12)
Taurine (12)
ADP (12)
Hypoxanthine (11)
Adenine (11)
3-phosphoglycerate (11)
Adenosine (11)
Spermidine (11)
Glycine (10)
Proline (10)
Nicotinamide (10)
Guanosine (10)
AMP (10)
Xanthine (10)
Choline (10)
Valine (10)
Uracil (10)
Glycerol (10)
Myo-inositol (10)
Tyrosine (10)
Inosine (10)
Thymine (9)
Serine (9)
NAD+ (9)
Guanine (9)
Cytidine (9)

First Public Date

2022 (82)
2021 (78)
2026 (75)
2023 (71)
2024 (69)
2025 (42)
2013 (28)
2014 (27)
2020 (26)
2019 (24)
2017 (11)
2016 (11)
2015 (4)
2018 (3)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (4)

Lab affiliation

EDyP (3)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Institute of Basic Medical Sciences, School of Basic Medicine, Peking Union Medical College; No. 5 Dongdansantiao, Dongcheng District, Beijing 100005, China (2)
Institute of Chemistry, Slovak Academy of Sciences (2)
Institute of Molecular Biology (IMB) (2)
LPHI, Univ Montpellier, CNRS, INSERM, Montpellier, France (2)
University of Freiburg, Institute of Biology II, Biochemistry/Functional Proteomics (2)
1. Department of Pharmacology & Therapeutics, McGill University, Montréal, Québec, Canada 2. Centre de Recherche en Biologie Structurale, Montréal, Québec, Canada (1)
198 shiqiao road, hangzhou, zhejiang province, P.R.China (1)
ANSES FOUGERES FRANCE (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Biochemistry & Functional Proteomics, Institute of Biology II, University of Freiburg, Freiburg, Germany (1)
Center for Mechanisms of Evolution, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, Arizona, USA (1)
College of Forestry and Horticulture, Xinjiang Agricultural University；Institute of Horticulture Crops, Ningxia Academy of Agriculture and Forestry Sciences； (1)
Departamento de Biología Celular. Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional.Avenida Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Alcaldía Gustavo A. Madero, Ciudad de México, Código Postal 07360. (1)
Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA (1)
Department of Biochemistry and Pharmacology, The University of Melbourne, Parkville, 3052, Victoria, Australia (1)
Department of Biology and Biochemistry University of Bath Bath UK (1)
Department of Cell Biology, Harvard Medical School (1)
Department of Genome Sciences, University of Washington, Seatte, WA, USA (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Department of Medical Biotechnology and Laboratory Science, Chang Gung University, Taiwan (1)
Department of Medical Microbiology, Radboudumc Center for Infectious Diseases, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, Netherlands (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA (1)
Department of Molecular biology, medical biochemistry and pathology, Faculty of Medicine, Laval University, Quebec, QC, Canada (1)
Department of Neurology, Xiangya Hospital, Central South University (1)
Department of Parasitology, Faculty of Science, BIOCEV, Charles University, 149 00 Czech Republic (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 D-82152 Martinsried Germany (1)

IsPrivate

False (11)

Model Flag

Non Kinetic (8)

Classification

protozoa (8)
fungi (3)

Study type

Transcription profiling by array (595)
RNA-seq of coding RNA (120)
Methylation profiling by array (28)
ChIP-seq (27)
Other (20)
Unknown experiment type (19)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA from single cells (14)
RNA-seq of non coding RNA (14)
RNA-seq of total RNA (11)
ChIP-chip by array (8)
ATAC-seq (7)
DNA-seq (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (2)
Animal - One-color microarray (2)
One-color microarray (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
MicroRNA profiling by high throughput sequencing (2)
Hi-C (2)
Genotyping by high throughput sequencing (2)
RIP-chip by array (1)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)

Release Date

2022 (179)
2015 (177)
2021 (172)
2010 (161)
2016 (155)
2023 (149)
2011 (148)
2014 (147)
2013 (142)
2012 (136)
2019 (132)
2024 (130)
2020 (128)
2025 (121)
2017 (114)
2018 (111)
2008 (103)
2009 (84)
2007 (46)
2006 (37)
2005 (20)
2026 (15)
2004 (15)
2003 (8)
2002 (7)
1999 (5)
2000 (3)
2001 (2)
1998 (2)
1997 (1)

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jmKudSpea1.1 mitochondrion

jmKudSpea1 mitochondrion

PRJEB81409 | ENA

Hexaploid wheat mitochondrion sequencing

PRJEB50328 | ENA

Tetraploid wheat mitochondrion sequencing

PRJEB50415 | ENA

Aegilops tauschii mitochondrion sequencing

PRJEB50417 | ENA

Triticum urartu mitochondrion sequencing

PRJEB50416 | ENA

A mitochondrion-free eukaryote contains proteins preadapted for import into an exogenous mitochondrion-related organelle

The endobiotic flagellate Monocercomonoides exilis is the only eukaryote known to lose any form of mitochondria and all its associated proteins in its evolutionary past. This final stage of the mitochondrial evolutionary pathway may serve as a model to explain events at their very beginning such as ...

ORGANISM(S): Trichomonas vaginalis

2023-03-11 | PXD035701 | Pride

Colias sifanica mitochondrion, complete genome.

The complete genome of Colias sifanica mitochondrion

PRJEB71137 | ENA

Percina brevicauda strain:mitochondrion | isolate:Hatchet Creek

Percina brevicauda strain:mitochondrion | isolate:Hatchet Creek Genome sequencing

PRJNA531172 | ENA

Archivesica marissinica isolate:Calyptogena marissinica mitochondrion, complete genome.

Archivesica marissinica isolate:Calyptogena marissinica mitochondrion, complete genome. Genome sequencing

PRJNA543188 | ENA

Pervasive within-Mitochondrion Single-Nucleotide Variant Heteroplasmy as Revealed by Single-Mitochondrion Sequencing.

Not available

S-EPMC5771502 | biostudies-literature

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