Mixed-disulfide

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Proteomics (245)
Unknown (201)
Transcriptomics (9)
Metabolomics (6)
Genomics (5)

Organisms

Allexis (243)
Arabidopsis thaliana (243)
Cyanophora paradoxa (243)
Ensifer adhaerens (243)
Entamoeba histolytica (243)
Escherichia coli (243)
Histomonas meleagridis (243)
Leishmania major strain Friedlin (243)
Listeria monocytogenes (243)
Lotus japonicus (243)
Medicago truncatula (243)
Methylohalobius crimeensis 10Ki (243)
Mus musculus (243)
Mycobacterium tuberculosis (243)
Oryza sativa Indica Group (243)
Physcomitrium patens (243)
Pseudomonas putida KT2440 (243)
Rattus norvegicus (243)
Saccharomyces cerevisiae (243)
Schizosaccharomyces pombe (243)
Schizosaccharomyces pombe 972h- (243)
Shigella (243)
Shigella flexneri (243)
Solanum lycopersicum (243)
Solanum tuberosum (243)
Staphylococcus aureus (243)
Mus musculus (6)
Homo sapiens (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
Escherichia coli (1)

Organisms

Mus musculus (2)
Hordeum vulgare (1)
Bacillus subtilis subsp. subtilis str. 168 (1)

Repository

pride (243)
biostudies-arrayexpress (8)
MetaboLights (6)
ENA (4)
geo (2)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (48)
Epithelial cell (19)
Permanent cell line cell (11)
Plant cell (11)
Blood serum (9)
Leaf (9)
Liver (9)
Brain (8)
Cell suspension culture (8)
Kidney (8)
Blood plasma (7)
Fibroblast (7)
Heart (6)
Colon (5)
Hepatocyte (5)
Lung (5)
Root (5)
Spleen (5)
Urine (5)
Whole body (5)
Embryonic stem cell (4)
Skin (4)
T cell (4)
B cell (3)
Blood (3)
Early embryonic cell (3)
Embryo (3)
Fibroblast of lung (3)
Seed (3)
Shoot (3)

Disease

Disease free (8)
Colon cancer (4)
Acute leukemia (3)
Malignant neoplasm of ovary (3)
Breast cancer (2)
Non-small cell lung carcinoma (2)
Tubular aggregate myopathy 1 (2)
Tubular aggregate myopathy 2 (2)
Type 2 diabetes mellitus (2)
Wounds and Injuries (2)
Adenovirus infectious disease (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Aspergillosis (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Cervix carcinoma (1)
Charcot-Marie-Tooth disease (1)
Crohn's disease (1)
Cystic fibrosis (1)
Degenerative disc disease (1)
Filarial elephantiasis (1)
Head and neck squamous cell carcinoma (1)
Inflammatory bowel disease (1)
Influenza (1)
Lung cancer (1)
Lymphoma (1)
Medulloblastoma (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (243)
Shotgun proteomics (140)
Bottom-up proteomics (47)
Data-dependent acquisition (25)
Affinity purification coupled with mass spectrometry proteomics (20)
Chemical cross-linking coupled with mass spectrometry proteomics (14)
Gel-based experiment (13)
Data-independent acquisition (10)
SWATH MS (9)
Mass spectrometry (5)
SRM/MRM (5)
Top-down proteomics (5)
Mass spectrometry imaging (2)
Mass spectrometry assay (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina HiSeq 4000 (2)
Chromium Next GEM Chip G (1)
10X v3 (1)
Xevo G2S QTOF mass spectrometer (Waters) (1)
Xevo G2S QTOF mass spectrometer (Waters Corp.) (1)
Flow Injection Analysis MS - Alternating (FIA-MS (Alternating)) (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2022 (40)
2025 (37)
2026 (33)
2023 (24)
2021 (24)
2020 (18)
2024 (17)
2017 (16)
2018 (13)
2019 (12)
2016 (10)
2015 (8)
2011 (3)
2008 (2)
2012 (1)
2010 (1)
2009 (1)
2014 (1)

UNIPROT ID/AC

3MGA_BACSU (1)
3MGH_BACSU (1)
4OT_BACSU (1)
53DR_BACSU (1)
6PGDH_BACSU (1)
6PGD_BACSU (1)
6PGL_BACSU (1)
AADK_BACSU (1)
AAPA_BACSU (1)
AAT1_BACSU (1)
AAT3_BACSU (1)
ABH_BACSU (1)
ABRB_BACSU (1)
ACCA_BACSU (1)
ACCC1_BACSU (1)
ACCC2_BACSU (1)
ACCD_BACSU (1)
ACDA_BACSU (1)
ACDB_BACSU (1)
ACDC_BACSU (1)
ACKA_BACSU (1)
ACNA_BACSU (1)
ACOA_BACSU (1)
ACOB_BACSU (1)
ACOC_BACSU (1)
ACOR_BACSU (1)
ACPK_BACSU (1)
ACPS_BACSU (1)
ACP_BACSU (1)
ACSA_BACSU (1)

CHEBI ID

CHEBI:17858 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:15741 (2)
CHEBI:28044 (2)
CHEBI:28683 (2)
CHEBI:15891 (2)
CHEBI:16027 (2)
CHEBI:195385 (1)
CHEBI:195383 (1)
CHEBI:195378 (1)
CHEBI:195377 (1)
CHEBI:195384 (1)
CHEBI:195397 (1)
CHEBI:195375 (1)
CHEBI:195396 (1)
CHEBI:195394 (1)
CHEBI:195376 (1)
CHEBI:195386 (1)
CHEBI:194544 (1)
CHEBI:173559 (1)
CHEBI:83362 (1)
CHEBI:83361 (1)
CHEBI:83172 (1)
CHEBI:85595 (1)
CHEBI:85601 (1)
CHEBI:85600 (1)
CHEBI:85599 (1)
CHEBI:85626 (1)
CHEBI:85597 (1)

Metabolite Name

C00356 (1)
C00024 (1)
C00016 (1)
C00010 (1)
C00005 (1)
C01613 (1)
C00004 (1)
C01204 (1)
C00127 (1)
C00096 (1)
C00029; C00052 (1)
C00842; C02097 (1)
C00301; C02741 (1)
C00700 (1)
C00044 (1)
C00002; C00286 (1)
C00492; C05404 (1)
C03794 (1)
C00061 (1)
C14791; C14792; C14793 (1)
C00035 (1)
C05692 (1)
C00008; C00054; C00361 (1)
C01674 (1)
C00689; C16688 (1)
C01344 (1)
C00206 (1)
C00015 (1)
C00112 (1)
C00363 (1)

First Public Date

2014 (3)
2013 (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
58.005479 (1)
N6 (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA from single cells (2)
ChIP-seq (1)

Release Date

2018 (18)
2020 (15)
2024 (14)
2022 (14)
2017 (14)
2021 (13)
2023 (12)
2019 (11)
2013 (10)
2025 (9)
2016 (9)
2012 (9)
2014 (9)
2011 (8)
2008 (8)
2015 (7)
2009 (7)
2007 (7)
2010 (5)
2026 (4)
2006 (2)
2004 (1)
2003 (1)
2002 (1)
2001 (1)

Lab affiliation

Zhejiang University, China (4)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (2)
College of Animal Sciences & Technology, Huazhong Agricultural University (2)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands (2)
Department of Biological Sciences, Vanderbilt University (2)
Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo (2)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Division of Proteomics of Stem Cells and Cancer (2)
Key Laboratory of Brain Functional Genomics of Shanghai and Ministry of Education, Institute of Brain Functional Genomics, School of Life Science and the Collaborative Innovation Center for Brain Science, East China Normal University, Shanghai, China (2)
Laboratory of Mass Spectrometry-Director MolSys Research Unit-Director CART (Center for Analytical Research and Technology)-Director Liège Université, Liège, Belgium (2)
Leibniz Institute of Plant Biochemistry (2)
Maria Sklodowska-Curie National Research Institute of Oncology, Gliwice Branch (2)
Max Perutz Labs, Campus Vienna Biocenter 5, 1030 Vienna (2)
"Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany" (1)
(1) Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Ghent, Belgium; (2) VIB Center for Plant Systems Biology, B-9052 Ghent, Belgium. (1)
1- Departamento de Biología Molecular, Centro de Biología Molecular "Severo Ochoa" (CBMSO), c/Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2- Instituto Universitario de Biología Molecular, IUBM, Universidad Autónoma de Madrid, Madrid, Spain. 3- Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 4- Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Quantitative Biology Center (QBiC), University of Tübingen, Germany; 4. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 5. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (1)
1. Departamento de Biología Molecular, Centro de Biología Molecular ‘“Severo Ochoa’” (CBMSO), c/ Nicolás Cabrera 1, Universidad Autónoma de Madrid, Madrid, Spain. 2. Centro de Investigación Biomédica en red de Enfermedades Raras (CIBERER), ISCIII, Madrid, Spain. 3. Instituto de Investigación Hospital 12 de Octubre, i+12, Universidad Autónoma de Madrid, Madrid, Spain. (lab head) (1)
1. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany 2. Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom (1)
1. Nephrology Department of Guilin No. 924 Hospital, Guangxi Key laboratory of Metabolic Diseases Research, Guilin Key laboratory of Kidney Diseases Research, 541002, Guilin, Guangxi, People’s Republic of China. 2. Clinical Medical Research Center, the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), 518020, Shenzhen, Guangdong, People’s Republic of China. (1)
1Department of Medicine, The University of Chicago (1)
Applied Tumor Biology, Institute of Pathology, Heidelberg University Hospital (1)
Asan Institute for Life Sciences, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea; Department of Digital Medicine, Asan Medical Center, University of Ulsan College of Medicine, Seoul, South Korea. (1)
Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA (1)
Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA (1)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (1)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)

466 Results

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