Mmc - OmicsDI

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Unknown (1330)
Transcriptomics (292)
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Organisms

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Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
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Organisms

Homo sapiens (22)
Mus musculus (17)
Acinetobacter baumannii ATCC 17978 (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Leptospira interrogans serovar Manilae (2)
Oryctolagus cuniculus (2)
Escherichia coli (2)
Arabidopsis thaliana (2)
Escherichia coli O103:H25 (1)
Mycoplasma mycoides subsp. capri PG3 (1)
Penicillium sp. MT2 MMC-2018 (1)
Penicillium sp. W3 MMC-2018 (1)
Acidomyces sp. 'richmondensis' (1)
Natrinema gari (1)
Listeria monocytogenes EGD-e (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Rhizopus microsporus (1)
Deinococcus radiodurans (1)
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Sorghum bicolor (1)
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unidentified (1)

Repository

biostudies-arrayexpress (316)
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geo (39)
pride (18)
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Technology Type

Mass Spectrometry (18)
Bottom-up proteomics (8)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
All-ion fragmentation (2)
Gel-based experiment (2)
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Mass spectrometry (1)

Instrument Platform

Illumina HiSeq 2000 (9)
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Gene Titan Instrument system (1)
Affymetrix GeneChip WT Labeling Kit (1)
NanoDrop ND-1000A spectrophotometer. Agilent Bioanalyzer 2100 (1)
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Ion Torrent PGM (1)
NA (1)
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Publication Date

2013 (50)
2015 (48)
2010 (45)
2014 (41)
2012 (33)
2011 (31)
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2008 (19)
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2024 (9)
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2018 (3)
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2007 (1)
2004 (1)
2002 (1)
2019 (1)

CHEBI ID

CHEBI:132542 (1)
CHEBI:156118 (1)
CHEBI:183249 (1)
CHEBI:183804 (1)
CHEBI:137590 (1)
CHEBI:72426 (1)
CHEBI:134587 (1)
CHEBI:183798 (1)
CHEBI:183799 (1)
CHEBI:183800 (1)
CHEBI:137552 (1)
CHEBI:74470 (1)
CHEBI:140951 (1)
CHEBI:140946 (1)
CHEBI:134487 (1)
CHEBI:132579 (1)
CHEBI:134242 (1)
CHEBI:65294 (1)
CHEBI:65302 (1)
CHEBI:65293 (1)
CHEBI:82750 (1)
CHEBI:86472 (1)
CHEBI:85853 (1)
CHEBI:85851 (1)
CHEBI:66856 (1)
CHEBI:64559 (1)
CHEBI:140940 (1)
CHEBI:64521 (1)
CHEBI:64431 (1)
CHEBI:64446 (1)

Metabolite Name

PI (40:6) (1)
PI (38:6).(16:0/22:6) (1)
PI (38:5)c (1)
PG (36:1)b.(18:0/18:1) (1)
PG (36:1)a.(18:0/18:1) (1)
PC (40:8)a.(18:2/22:6) (1)
PC (40:7)b.(18:1/22:6) (1)
PC (40:7)a.(18:1/22:6) (1)
PC (40:6).(18:0/22:6) (1)
PC (40:5)a.(18:0/22:5) (1)
PC (38:6)c.(18:2/20:4) (1)
PC (38:6)a.(16:0/22:6) (1)
PC (38:4).(18:0/20:4) (1)
PC (38:3).(18:0/20:3) (1)
PC (38:2)a.(18:0/20:2) (1)
PC (38:1).(18:0/20:1) (1)
PC (37:1).(18:0/19:1) (1)
PC (36:6).(14:0/22:6) (1)
PC (36:5)a.(16:0/20:5) (1)
PC (36:3)b.(18:1/18:2) (1)
PC (36:2)c.(18:1/18:1) (1)
PC (36:2)b.(18:0/18:2) (1)
PC (36:2)a.(16:0/20:2) (1)
PC (36:1).(18:0/18:1) (1)
PC (36:1).(16:0/20:1) (1)
PC (36:0).(18:0/18:0) (1)
PC (35:2)a.(17:0/18:2) (1)
PC (35:1).(18:0/17:1) (1)
PC (35:1).(16:0/19:1) (1)
PC (34:2).(16:0/18:2) (1)

First Public Date

2025 (15)
2026 (13)
2020 (13)
2014 (13)
2024 (10)
2023 (9)
2022 (9)
2019 (7)
2021 (6)
2015 (4)
2018 (3)
2016 (3)
2017 (2)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (5)
Active, not recruiting (1)

Lab affiliation

Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
College of Biotechnology and Pharmaceutical Engineering, Nanjing Tech University (1)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (1)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (1)
Department of Laboratory Medicine and Pathology University of Minnesota School of Medicine 420 Delaware Street SE, MMC 609 Minneapolis, MN (1)
Department of Neurology, Emory University, Atlanta, GA 30322, US (1)
Department of Pediatrics, University of Alabama at Birmingham, United States of America. (1)
Federal State Budgetary Institution “Research Institute for Complex Issues of Cardiovascular Diseases” (1)
Head of the Necker Proteomics Faculty of Medecine, University Paris Cité SFR Necker INSERM US24 160 rue de Vaugirard | 75015 Paris Tél. 01 40 61 54 67 (1)
Institute of Veterinary Bacteriology, Vetsuisse Faculty – University of Bern, Switzerland, Multidisciplinary Center for Infectious Diseases (MCID), University of Bern, Bern, Switzerland (1)
Molecular Oncology and Pathology Lab, Hospital Universitario La Paz-IdiPAZ, Madrid, Spain (1)
Plant Cell and Molecular Biology, Institute of Biology, Humboldt-Universität zu Berlin, Berlin 10115, Germany (1)
Pr. Claire GAIANI - Directrice Adjointe du LIBio Membre de l'Institut Universitaire de France Université de Lorraine LIBio – Laboratoire d’Ingénierie des Biomolécules 2 avenue de la Forêt de Haye - BP 20163 54505 Vandoeuvre-lès-Nancy - FRANCE (1)
Professor, Department of Laboratory Medicine, UCSF (1)
The George Washington University, Department of Biochemisty and Molecular Medicine, Cacncer Center, D.C., 20037 (1)
University of Zurich, University Hospital of Zurich (1)
Yale University (1)

Keyword

Mitomycin-C (1)
Xeloda (1)
Avastin (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (11)
fungi (1)

Study type

Transcription profiling by array (162)
RNA-seq of coding RNA (46)
ChIP-seq (44)
Unknown experiment type (11)
Methylation profiling by array (9)
Comparative genomic hybridization by array (8)
Other (8)
Methylation profiling by high throughput sequencing (8)
Interventional (5)
ChIP-chip by tiling array (3)
RNA-seq of coding RNA from single cells (3)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Differential (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)
Observational (1)

Release Date

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2014 (71)
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2017 (59)
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2011 (47)
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2007 (5)
2004 (5)
2005 (5)
2003 (1)
2002 (1)

Location

Australia (2)
United Kingdom (2)
Japan (2)
New Zealand (1)
South Korea (1)

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Characterization of A. baumannii Mitomycin C (MMC) response

Transcriptional profiling of A. baumannii ATCC 17978 comparing treated-MMC cultures with non-MMC treated cultures Two-condition experiment A. baumannii 17978 MMC+ vs A. baumannii 17978 MMC-. Biological replicates:3, Technical replicates:2

ORGANISM(S): Acinetobacter baumannii ATCC 17978

2013-11-14 | E-GEOD-44735 | biostudies-arrayexpress

Deinococcus radiodurans R1 Cells was treated with MMC (5 M-NM-

Transcriptional profiling of Deinococcus radiodurans comparing control wild type cells with bphPR deletion mutant were treated with MMC (5 M-NM-

ORGANISM(S): Deinococcus radiodurans R1

2014-07-07 | E-GEOD-59138 | biostudies-arrayexpress

Penicillium sp. MT2 MMC-2018

Penicillium sp. MT2 MMC-2018 Genome sequencing and assembly

PRJNA445729 | ENA

Penicillium sp. W3 MMC-2018

Penicillium sp. W3 MMC-2018 Genome sequencing and assembly

PRJNA445728 | ENA

ARF3 regulates MMC formation

To study the mechanism by which ARF3 regulates MMC differentiation

PRJEB38604 | ENA

Transcription profiling by array of Fanconi Anemia patient (FANCA) EBV cell line transduced with control shRNA or a shRNA targeting p53 and treated with a Mitomycin C (MMC) pulse

Time point (H0, H24, H72) expression data from an EBV cell line obtained from a Fanconi Anemia patient (FANCA) transduced with a control shRNA (sh Ctrl) (n=3) or a shRNA targeting p53 (sh p53) (n=3) and treated with a brief MMC pulse.

ORGANISM(S): Homo sapiens

2012-10-23 | E-MTAB-1099 | biostudies-arrayexpress

Genome-wide analysis of E.coli response to mitomycin (MMC) treatment in wild type and recN mutant

We report the role of recN in the induction of the sos response Examination of gene profiling at two time points after addition of mitomycin (MMC) at 10Âµg/ml

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

2016-04-01 | E-GEOD-74882 | biostudies-arrayexpress

megaspore_mothercell

Cell type specific transcriptome analysis from laser microdissected megaspore mother cells (MMC) from Arabidopsis thaliana (L.) Heynh., accession Landsberg erecta.

ORGANISM(S): Arabidopsis thaliana

2011-09-23 | E-MEXP-3137 | biostudies-arrayexpress

Comparison of conjunctival tissue after trabeculectomy with and without MMC

PRJNA1309021 | ENA

microRNA profiling for prediction of chemoradiation efficacy in locally advanced head and neck squamous cell carcinoma

The predictive value of microRNAs for the efficacy of chemoradiation (CRTX) in locally advanced head and neck squamous cell carcinoma (HNSCC) was evaluated. Formalin-fixed, paraffin-embedded tumor material was collected from patients with locally advanced HNSCC treated within the ARO-0401 phase III ...

ORGANISM(S): Homo sapiens

2017-03-30 | E-MTAB-5198 | biostudies-arrayexpress

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