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TranscriptomicsCDK8 knockdown in HT-29 human colon cancer cells
Transcriptional profiling of HT-29 human colon cancer cells transfected with non-targeting control (NTC) siRNA and two different siRNA sequences against CDK8 (siCDK8-1 and siCDK8-2). Three condition experiment comparing siNTC versus siCDK8-1 and siCDK8-2 after 3 days (3 biological replicates each); ...
ORGANISM(S): Homo sapiens 
2012-03-05 | E-GEOD-30815 | biostudies-arrayexpress
TranscriptomicsCDK8 and MED12 knockdown in R1 mouse ES cells
Transcriptional profiling of R1 mouse ES cells infected with non-targeting control (NTC) shRNA and two different shRNA sequences against Cdk8 (shCdk8-1 and shCdk-2) and Med12 (shMed12-1 and shMed12-2). Multi-condition experiment comparing shNTC versus shCdk8-1 and shCdk8-2 after 8 days (3 biological...
ORGANISM(S): Mus musculus 
2012-03-05 | E-GEOD-30816 | biostudies-arrayexpress
TranscriptomicsCDK8 knockdown in HT-29 cells and CDK8 & MED12 knockdown in R1 cells
This SuperSeries is composed of the following subset Series: GSE30815: CDK8 knockdown in HT-29 human colon cancer cells GSE30816: CDK8 and MED12 knockdown in R1 mouse ES cells Refer to individual Series
ORGANISM(S): Mus musculus 
2012-03-05 | E-GEOD-30817 | biostudies-arrayexpress
TranscriptomicsPRPF6 regulated alternative splicing in colon cancer cell lines
PRPF6, an RNA binding component of the pre-mRNA spliceosome, is an essential driver of oncogenesis in colon cancer. PRPF6 is both amplified and overexpressed in colon cancer and cells with high PRPF6 levels are sensitive to its loss. Here we investigate alternative splicing changes in colon cancer ...
ORGANISM(S): Homo sapiens 
2014-06-18 | E-GEOD-56846 | biostudies-arrayexpress
TranscriptomicsExpression data from colon fibroblasts treated with Sonic hedgehog homolog (SHH)
Canonical Hedgehog (Hh) signaling regulates the expression of genes that are critical to the patterning and development of a variety of organ systems. In adult, both ligand-dependent and ligand-independent Hh pathway activation are known to promote tumorigenesis. Recent studies have shown that in tu...
ORGANISM(S): Homo sapiens 
2011-05-17 | E-GEOD-29316 | biostudies-arrayexpress
UnknownEvidence for sequenced molecular evolution of IDH1 mutant glioblastoma from a distinct cell of origin.
Not available
S-EPMC3236649 | biostudies-literature
TranscriptomicsSPR509: Lung metastasis
Determine gene expression differences between normal, metastatic and non-metastatic mouse lung tissue. Priming of the organ-specific premetastatic sites is thought to be an important yet incompletely understood step during metastasis. In this study, we show that the metastatic tumors we examined ove...
ORGANISM(S): Mus musculus 
2014-11-06 | E-GEOD-62817 | biostudies-arrayexpress
TranscriptomicsAgilent 244A aCGH array for breast, lung, melanoma, ovary, and prostate
373 tumors were profiled for copy-number alterations with the high-resolution Agilent 244A aCGH Array. Tumor samples were assayed on Agilent Human Genome CGH 244A Microarrays with the intent of surveying the landscape of genomic alterations in 5 tumor types. Human male genomic DNA (Promega P/N G1471...
ORGANISM(S): Homo sapiens 
2010-07-29 | E-GEOD-20393 | biostudies-arrayexpress
TranscriptomicsColon biopsies from Crohns patients and healthy controls
The aim of this study was to investigate differential intestinal gene expression in patients with Crohn's disease (CD) and controls. 172 biopsies from CD and control subjects were studied. Endoscopic biopsies were taken at ileocolonoscopy from five specific anatomical locations including the termi...
ORGANISM(S): Homo sapiens 
2010-07-19 | E-GEOD-20881 | biostudies-arrayexpress
Transcriptomics40 IPF patients and 8 healthy controls
There is microscopic spatial and temporal heterogeneity of pathologic changes in idiopathic pulmonary fibrosis (IPF) lung tissue, which may relate to heterogeneity in pathophysiological mediators of disease and clinical progression. We measured gene expression in samples from lung biopsies or explan...
ORGANISM(S): Homo sapiens 
2014-10-14 | E-GEOD-53845 | biostudies-arrayexpress
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