Molecular cargo

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Acidithiobacillus ferrooxidans ATCC 53993 (196)
Aerococcus urinae NBRC 15544 = CCUG 36881 (196)
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Mass Spectrometry (196)
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Instrument Platform

Q Exactive (4)
NextSeq 1000 (2)
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2025 (70)
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2010 (6)
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UNIPROT ID/AC

P51149 (1)
P20339 (1)

CHEBI ID

CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:75195 (1)
CHEBI:138553 (1)
CHEBI:138554 (1)
CHEBI:74240 (1)
CHEBI:72072 (1)
CHEBI:72076 (1)
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CHEBI:91040 (1)
CHEBI:74372 (1)
CHEBI:72080 (1)
CHEBI:74238 (1)
CHEBI:91036 (1)
CHEBI:74371 (1)

Metabolite Name

PI(39:6) (1)
M275T207 (1)
M356T257 (1)
Docosatetraenoylcarnitine (1)
(aspartyl)adenylate (1)
(S)-Nerolidol_3-O-[a-L-rhamnopyranosyl-(1->2)-b-D-glucopyranoside] (1)
3-(3-(1,2-Dihydroxy-1,2-dihexanoyl)thiopropane)inositol-4,5-diphosphate (1)
Spinacoside_D (1)
Daidzein_6''-O-acetate (1)
N-Succinimidyl 4-[4-(dimethylamino)phenylazo]benzoate (1)
1-Cyclohexyl-3-(3,4-dichlorophenyl)urea (1)
N-[(4E,8Z)-1,3-dihydroxyoctadeca-4,8-dien-2-yl]hexadecanamide_1-glucoside (1)
Phosphoramide_mustard (1)
5'-Amino-2,3'-bithiophene-4'-carboxamide (1)
4-Methoxy-6-[2-[4-(3-methylbut-2-enoxy)phenyl]ethyl]-1,3-benzodioxole (1)
1-(Pyrimidin-2-yl)-1,4-diazepane (1)
N-Benzoylaminopurine (1)
4-{5-Bromo-1H-pyrazolo[3,4-b]pyridin-1-yl}-1-methylpiperidine (1)
N-Butyl-3,4-dichlorobenzamide (1)
[2-Amino-1-(2-chlorophenyl)ethyl]dimethylamine (1)
9(10)-Epoxy-12Z-octadecenoic acid (1)
N-Ethyl-6,7-dimethoxy-4-quinazolinamine (1)
[2-[4-methyl-2-(2-methylpropanoyloxy)phenyl]oxiran-2-yl]methyl 2-methylpropanoate (1)
N-Methyltetrahydro-2H-pyran-4-amine (1)
Ethyl 5-(2-chloroacetyl)-2,4-dimethyl-1H-pyrrole-3-carboxylate (1)
Bis(2,4,6-trimethylphenyl)phosphine (1)
2-Chloro-3-(difluoromethyl)pyridine (1)
6-(Thiophen-3-yl)imidazo[2,1-b][1,3]thiazole (1)
5-[[17-(5,6-dihydroxy-6-methylheptan-2-yl)-3,12-dihydroxy-4,4,10,13,14-pentamethyl-2,3,5,6,7,11,12,15,16,17-decahydro-1H-cyclopenta[a]phenanthren-2-yl]oxy]-3-hydroxy-3-methyl-5-oxopentanoic acid (1)
2-(10-Heptadecenyl)-6-hydroxybenzoic_acid (1)

First Public Date

2026 (42)
2025 (38)
2024 (15)
2021 (14)
2023 (11)
2022 (11)
2020 (5)
2019 (4)
2018 (2)
2017 (2)
2016 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

1Department of Biology, National and Kapodistrian University of Athens, Panepistimioupolis, Athens, 15784, Greece. 2Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Heraklion, 70013, Greece. (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (2)
Department of Cell Biology, Harvard Medical School, Boston MA, USA (2)
Department of Molecular Genetics and Microbiology, IMRIC, Faculty of Medicine, Hebrew University, Jerusalem, Israel (2)
Dept. of Molecular Cell Biology, Institute of Biochemistry of the Romanian Academy (IBRA) (2)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Monash University, Clayton Campus Clayton 3800 Victoria Australia (2)
Division of Gastroenterology and Hepatology, School of Medicine, University of Colorado Anschutz Medical Campus,Colorado, USA (2)
Functional Proteomics Lab, Dpt. Life Sciences, University of Siena, Italy (2)
Head of Cell Signaling and Clinical Proteomics Group. IIS Biobizkaia. Ikerbasque. (2)
Institute of Molecular Biology (IMB), Mainz, Germany (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
School of Biochemistry Faculty of Life Sciences University of Bristol (2)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1.Semmelweis University, Department of Pharmacology and Pharmacotherapy, Budapest, Hungary. 2.Pharmahungary Group, Szeged, Hungary (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
1Laboratory of Cytometry, Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland (1)
4Cellular Proteome Research, Helmholtz Centre for Infection Research, Braunschweig, Germany (1)
Academy of Finland Postdoctoral Researcher EV Core and Research Faculty of Pharmacy, Division of Pharmaceutical Biosciences Viikinkaari 9 00014 University of Helsinki, Finland (1)
Associate Professor, Cedars-Sinai Medical Center, Surgery (1)
Associate Professor, Department of Chemistry Associate Professor, Thomas C. Jenkins Department of Biophysics Associate Professor, Department of Biology (1)
BPMP, CNRS, INRAE, Institut Agro, Univ Montpellier, 34060 Montpellier, France (1)
Bavarian Center for Biomolecular Mass Spectrometry, Freising, TU Munich (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Brainstorm Brain Cancer Research, Brain and Mind Centre, University of Sydney, NSW, Australia School of Life and Environmental Science, University of Sydney, New South Wales, Australia (1)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
CNR (1)
CNR ISPAAM , Proteomics, Metabolomics and Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment, National Research Council, 80055 Portici, Italy. (1)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (6)
MicroRNA profiling by high throughput sequencing (2)
Other (2)
ChIP-seq (2)
MicroRNA profiling by array (2)
RNA-seq of total RNA (2)
Unknown experiment type (1)
MicroRNA profiling by high-throughput sequencing (1)
Translation profiling (1)
Human - One-color microarray (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (414)
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2019 (226)
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2008 (52)
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Membrane lipid as cofactor of cargo uptake and release by box-like lipid transfer proteins

Lipid transfer proteins (LTPs) shuttle their cargo lipids between cellular membranes. LTPs facilitate the costly extraction of a lipid from a donor membrane, and its delivery into the acceptor membrane, but the mechanisms remain poorly understood. We combined extensive molecular dynamics simulations...

2026-10-06 | MTBLS15933 | MetaboLights

ECM deposition is driven by caveolin1-dependent regulation of exosomal biogenesis and cargo sorting

The composition and physical properties of the extracellular matrix (ECM) critically influence tumor progression, but the molecular mechanisms underlying ECM layering are poorly understood. Tumor-stroma interaction is critically dependent on cell-cell communication mediated by exosomes, small ves...

2020-10-07 | MTBLS1969 | MetaboLights

ECM deposition is driven by caveolin1-dependent regulation of exosomal biogenesis and cargo sorting

2020-10-07 | MTBLS1977 | MetaboLights

Del_Conte_Zerial2008_Rab5_Rab7_cut_out_switch

Cut-out switch model Membrane identity and GTPase cascades regulated by toggle and cut-out switches Perla Del Conte-Zerial, Lutz Brusch, Jochen C Rink, Claudio Collinet, Yannis Kalaidzidis, Marino Zerial, and Andreas Deutsch: ...

2024-09-02 | BIOMD0000000174 | BioModels

BAG6KO impacts extracellular vesicle mRNA cargo

The mRNA cargo of B-16V and B-16V-delta-BAG6 cells was sequenced with RNA seq.

ORGANISM(S): Mus musculus

2019-11-29 | E-MTAB-7123 | biostudies-arrayexpress

MGAT3 and MGAT5 overexpression alters the protein cargo of extracellular vesicles released by metastatic melanoma cells

Extracellular vesicles (EVs) are potential non-invasive diagnostic, prognostic, and therapeutic tools. Additionally, they are important contributors to tumorigenesis. Glycosylation has been found to modulate the composition of the EV proteome, and increased amounts of beta 1,6-branched N-glycans, sy...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-11-08 | MSV000096340 | MassIVE

Cargo analysis of autophagic bodies in Saccharomyces cerevisiae

Isolated yeast autophagic bodies and the total cell lysate were analyzed by mass spectrometry.

ORGANISM(S): Saccharomyces Cerevisiae (baker's Yeast)

2024-08-22 | PXD052405 | JPOST Repository

Molecular basis of TMED9 oligomerization and entrapment of misfolded protein cargo in the early secretory pathway

Xiao L, Pi X, Goss AC, El-Baba T, Ehrmann JF, Grinkevich E, Bazua-Valenti S, Padovano V, Alper SL, Carey D, Udeshi ND, Carr SA, Pablo JL, Robinson CV, Greka A, Wu H. 2024 Intracellular accumulation of misfolded proteins causes serious human proteinopathies. The transmembrane emp24 domain 9 (TMED9) ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-06-29 | MSV000089757 | MassIVE

Cooperative cargo transport by several molecular motors.

Not available

S-EPMC1283533 | biostudies-literature

Myosin Va molecular motors manoeuvre liposome cargo through suspended actin filament intersections in vitro.

Not available

S-EPMC5461480 | biostudies-literature

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