Molecular virology

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Unknown (20276)
Transcriptomics (284)
Genomics (221)
Proteomics (84)
Metabolomics (22)
Genomic (1)
Other (1)

Organisms

Homo sapiens (155)
Mus musculus (47)
Gallus gallus (8)
Canis lupus familiaris (7)
Aedes aegypti (5)
Rattus norvegicus (4)
Arabidopsis thaliana (4)
Viruses (3)
Macaca mulatta (3)
Nicotiana tabacum (3)
Sus scrofa (3)
Chlorocebus sabaeus (2)
Triticum aestivum (2)
Saccharomyces cerevisiae (2)
JC polyomavirus (1)
Rhinolophus ferrumequinum (1)
Mayaro virus (1)
unidentified influenza virus (1)
Toscana virus (1)
uncultured marine microorganism (1)
Bacillus anthracis str. Ames (1)
Aedes albopictus (1)
Fusarium oxysporum (1)
Bovine viral diarrhea virus 1 (1)
Cafeteria roenbergensis virus BV-PW1 (1)
Bean pod mottle virus (1)
Acanthamoeba polyphaga mimivirus (1)
Rousettus aegyptiacus (1)
Ostreococcus tauri (1)
Human alphaherpesvirus 1 (1)

Organisms

Homo sapiens (82)
Mus musculus (35)
Gallus gallus (7)
Nicotiana benthamiana (3)
Trichophyton rubrum (2)
Neisseria meningitidis (2)
Mesocricetus auratus (2)
Saccharomyces cerevisiae (2)
Bos taurus (2)
Arabidopsis thaliana (2)
Staphylococcus epidermidis (2)
Trichophyton rubrum BMU01672 (1)
Echinococcus granulosus granulosus (1)
Shigella flexneri 2a str. 301 (1)
Parvoviridae (1)
Gobiocypris rarus (1)
Marmota monax (1)
Human immunodeficiency virus 1 (1)
Hepatitis B virus (1)
Influenza A virus (1)
Aedes aegypti (1)
Glycine max (1)
Equus caballus (1)
Staphylococcus aureus (1)
Oryza sativa (1)
feces metagenome (1)
Sus scrofa (1)

Repository

biostudies-arrayexpress (286)
ENA (215)
pride (73)
MetaboLights (21)
iProX (6)
geo (4)
MassIVE (4)
EGA (2)
dbGaP (1)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (20)
Fibroblast (8)
Epithelial cell (7)
Macrophage (4)
Hepatocyte (3)
Lung (3)
Permanent cell line cell (3)
Blood cell (2)
Cell suspension culture (2)
Diploid cell (2)
HeLa cell (2)
Liver (2)
Monocyte (2)
Primary cell (2)
B cell (1)
Blood plasma (1)
Blood serum (1)
Bronchial epithelial cell (1)
Embryonic fibroblast (1)
Embryonic stem cell (1)
Long bone (1)
Mesenchymal cell (1)
Nasopharynx (1)
Organism or virus or viroid (1)
Plant (1)
Saliva (1)
Skin (1)
Spleen (1)
Stem cell (1)
Whole body (1)

Disease

Disease free (4)
COVID-19 (2)
Mock infection (1)
Alzheimer's disease (1)
HIV (1)
Papillary thyroid carcinoma (1)
Not infected (1)
Viral myocarditis (1)
Cancer (1)
Osteosarcoma (1)
Prostate cancer (1)
SINV infection (1)
Breast carcinoma (1)
Not Available (1)
Chronic fatigue syndrome (1)
Colon cancer (1)
Hepatitis C (1)
Herpes simplex (1)
Lymphocytic choriomeningitis (1)
Neuroblastoma (1)
Prostate adenocarcinoma (1)
Retinal degeneration (1)
Tick borne (1)
Typhoid fever (1)
Zika fever (1)

Technology Type

Mass Spectrometry (73)
Shotgun proteomics (31)
Bottom-up proteomics (20)
Data-dependent acquisition (17)
Mass spectrometry (16)
Affinity purification coupled with mass spectrometry proteomics (16)
Gel-based experiment (7)
Mass spectrometry assay (4)
Top-down proteomics (4)
NMR spectroscopy (1)
Affinity proteomics (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
NextSeq 500 (6)
G2565AA DNA microarray scanner [Agilent] (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
1200 series LC/MSD SL (2)
Agilent 6890N/5973inert (2)
Local workstation (1)
Chromium Single Cell 5' Library & Gel Bead Kit v2 (1)
FLOQSwab (Copan) (1)
Bioinformatics Core Facility, Centre for Molecular Medicine, CEITEC Masaryk University (1)
Cell culture laboratory, BSL-3 lab (1)
Library preparation kit (1)
RNA isolation laboratory (1)
BSL-3 laboratory (1)
Desktop (1)
MA900, Sony (1)
10x Chromium Controller (1)
Microcentrifuge (1)
Sequel (1)
Affymetrix GeneChip Scanner 3000 7G (1)
ScanArray scanning hardware (1)
418 [Affymetrix] (1)
NextSeq 1000 (1)
Sony MA900 (1)
10x Genomics Chromium Controller (1)
NextSeq 2000 (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
Instrument (1)

Publication Date

2013 (55)
2012 (46)
2011 (31)
2014 (27)
2015 (25)
2010 (25)
2022 (23)
2024 (22)
2025 (20)
2023 (16)
2026 (15)
2016 (15)
2008 (13)
2019 (12)
2020 (9)
2007 (9)
2018 (8)
2021 (7)
2017 (7)
2009 (5)
2005 (3)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:16704 (3)
CHEBI:16750 (3)
CHEBI:16335 (3)
CHEBI:17596 (3)
CHEBI:229469 (2)
CHEBI:20794 (2)
CHEBI:19227 (2)
CHEBI:19228 (2)
CHEBI:20129 (2)
CHEBI:17126 (2)
CHEBI:22660 (2)
CHEBI:18186 (2)
CHEBI:26986 (2)
CHEBI:16811 (2)
CHEBI:28300 (2)
CHEBI:20607 (2)
CHEBI:25017 (2)
CHEBI:28044 (2)
CHEBI:27266 (2)
CHEBI:18211 (2)
CHEBI:27389 (2)
CHEBI:15891 (2)
CHEBI:28867 (2)
CHEBI:16040 (2)
CHEBI:17802 (2)
CHEBI:17562 (2)
CHEBI:16449 (2)
CHEBI:20392 (2)
CHEBI:57589 (2)
CHEBI:17191 (2)

Metabolite Name

2'-O-methyluridine (2)
7-methylguanosine (2)
TAG 59:12 (15:0/22:6/22:6) (2)
TAG 55:7 (15:0/18:1/22:6) (2)
TAG 55:6 (15:0/18:0/22:6) (2)
TAG 55:1 (15:0/18:1/22:0) (2)
TAG 51:5 (15:0/18:1/18:4) (2)
TAG 51:4 (15:0/18:1/18:3) (2)
TAG 51:3 (15:0/18:1/18:2) (2)
TAG 51:2 (15:0/18:1/18:1) (2)
TAG 49:1 (15:0/16:0/18:1) (2)
TAG 48:1 (14:0/16:0/18:1) (2)
TAG 48:1 (15:0/15:0/18:1) (2)
TAG 47:1 (14:0/15:0/18:1) (2)
2'-O-methylcytidine (2)
Uridine (2)
Inosine (2)
Guanosine (2)
Cytidine (2)
Adenosine (2)
1-methyladenosine (2)
Propionylcarnitine (2)
Citrulline (2)
Taurine (2)
3-Hydroxy-DL-Kynurenine (1)
5-carboxymethyluridine (1)
8-oxoguanosine (1)
5-methyl-2'-O-methyluridine (1)
Dihydrouridine (1)
N6-,O2'dimethyladenosine (1)

First Public Date

2014 (57)
2026 (25)
2023 (19)
2025 (16)
2021 (15)
2024 (14)
2020 (14)
2022 (12)
2016 (10)
2019 (9)
2013 (9)
2017 (7)
2015 (6)
2018 (2)

Classification

viruses (4)
bacteria (4)
fungi (3)
helminths (1)

Study type

Transcription profiling by array (217)
RNA-seq of coding RNA (21)
Other (10)
RNA-seq of non coding RNA (7)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (4)
Cell line - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
RNAi profiling by array (2)
Ribo-seq (2)
Transcription profiling by SAGE (1)
Transcription profiling by RT-PCR (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (1900)
2021 (1777)
2023 (1563)
2020 (1440)
2025 (1246)
2024 (1172)
2019 (1012)
2015 (1009)
2018 (993)
2016 (970)
2017 (941)
2014 (910)
2013 (733)
2012 (727)
2011 (666)
2010 (584)
2009 (449)
2008 (383)
2007 (353)
2006 (305)
2005 (267)
2004 (189)
2002 (163)
2003 (158)
2026 (144)
2000 (141)
2001 (138)
1999 (123)
1998 (92)
1997 (9)

Lab affiliation

Institute of Virology, Technical University of Munich, Munich, Germany. (4)
Institute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich (3)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (2)
Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Südufer 10, 17493 Greifswald-Insel Riems,Germany (2)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
Caltech (1)
Centre for Structural Systems Biology, Leibniz Institute of Virology (LIV), Faculty V: School of Life Sciences, University of Siegen, Deutsches Elektronen-Synchrotron (DESY) (1)
Clinical Proteomics Medizinisches Proteom-Center Ruhr-University Bochum (1)
Co-Director of the Duke Center for Virology Department of Molecular Genetics and Microbiology (MGM) Duke Human Vaccine Institute (DHVI) Duke University School of Medicine (1)
Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India (1)
Department of Cellular and Molecular Pharmacology (1)
Department of Infectious Diseases and the Key Lab of Endogenous Infection, Shenzhen Nanshan People's Hospital and The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen 518052, China (1)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany (1)
Department of Molecular Biology, Princeton University (1)
Department of Molecular Biology, Princeton University, USA (1)
Department of Molecular Medicine, Institute of Virology, Biomedical Research Center, Slovak Academy of Sciences (1)
Department of Rickettsiology Biomedical Research Center Sloval Republic (1)
Department of Virology III, National Institute of Infectious Diseases (1)
Department of Virology and Immunology, Institute of Microbiology and Biotechnology, Maria Curie-Sklodowska University in Lublin, Poland (1)
Department of Virology and Viral Animal Diseases, National Veterinary Research Institute - State Research Institute, Pulawy, Poland (1)
Division of Medical Virology, Department of Pathology (1)
Dr Andreas Pichlmair, Prof. Andreas Pichlmair, Technical University Munich, Faculty of Medicine, Institute of Virology, Viral Immunopathology, Schneckenburger Str. 8, D-81675 Munich, Germany (1)
Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Germany; European XFEL GmbH, Germany (1)
Immunopathology of Virus Infections Institute of Virology Technical University of Munich (1)
Infectious Diseases Translational Research Programme (ID TRP): Department of Microbiology & Immunology: Yong Loo Lin School of Medicine: LSI Immunology Programme: National University of Singapore, Singapore. (1)
Institute for Microbiology and Virology, Riga Stradins University, Riga, Latvia (1)
Institute for Virology, University Medical Center of the Johannes Gutenberg-University, Mainz, Germany (1)
Institute of Human Virology, University of Maryland School of Medicine, Baltimore, Maryland, USA (1)
Institute of Medical Virology, University of Zurich, Zurich, Switerland (1)

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