Monocot - OmicsDI

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Unknown (873)
Genomics (197)
Transcriptomics (83)
Proteomics (23)
Other (3)
Metabolomics (2)
Methylation profiling (1)

Organisms

Oryza sativa (26)
Zea mays (19)
Brachypodium distachyon (10)
Arabidopsis thaliana (10)
Triticum aestivum (7)
Oryza sativa Japonica Group (6)
Setaria viridis (5)
Sorghum bicolor (3)
Persea americana (2)
Lolium perenne (2)
Musa acuminata AAA Group (2)
Elaeis guineensis (2)
Amborella trichopoda (1)
Populus trichocarpa (1)
Pseudomonas aeruginosa PAO1 (1)
Glycine max (1)
Triticum (1)
Pyrus x bretschneideri (1)
Erysiphe neolycopersici (1)
Golovinomyces cichoracearum (1)
Prosthechea radiata (1)
Raddia brasiliensis (1)
Echinodorus uruguayensis (1)
Streptochaeta angustifolia (1)
Zostera marina (1)
Cyperus alternifolius (1)
Goudaea ospinae (1)
Tradescantia fluminensis (1)
Pharus parvifolius (1)
Hemerocallis lilioasphodelus (1)

Organisms

Aspergillus niger (36)
Oryza sativa (14)
Aspergillus niger NRRL3 (9)
Zea mays (8)
Brachypodium distachyon (6)
Arabidopsis thaliana (4)
Golovinomyces cichoracearum (3)
Triticum aestivum (3)
Setaria viridis (3)
Oryza sativa Japonica Group (3)
Alpinia purpurata (2)
Elaeis guineensis (2)
Persea americana (2)
Musa acuminata subsp. acuminata (2)
Glycine max (2)
Pseudomonas cannabina pv. alisalensis str. PSa866 (1)
Pseudomonas cannabina pv. alisalensis str. PSa1-3 (1)
Tulipa fosteriana (1)
Acorus gramineus (1)
Typha latifolia (1)
Pythium myriotylum (1)
Bacillus cereus C1L (1)
Ananas comosus var. bracteatus (1)
Pseudomonas cannabina pv. alisalensis str. T3C (1)
Pseudomonas cannabina pv. alisalensis str. BS91 (1)
Erysiphe neolycopersici (1)
Martinezella rhizogenes (1)
Tofieldia thibetica (1)
Spirodela polyrhiza (1)
Sporobolus alterniflorus (1)

Repository

ENA (187)
geo (53)
biostudies-arrayexpress (44)
pride (21)
GNPS (1)
iProX (1)
MetaboLights (1)
PAXDB (1)

Tissue

Leaf (13)
Plant cell (8)
Root (3)
Flower (2)
Shoot (2)
Anther (1)
Internode (1)
Protein secretion (1)
Seedling (1)
Tuber (1)
Whole body (1)
Whole plant (1)

Disease

PMV infected (1)
Disease free (1)

Technology Type

Mass Spectrometry (21)
Shotgun proteomics (14)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
HDMSE (2)
Mass spectrometry (1)
All-ion fragmentation (1)
Proteogenomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2000 (2)
BioChipReader (1)
Illumina HiSeq 1000 (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (9)
2013 (9)
2024 (9)
2020 (9)
2018 (8)
2015 (8)
2021 (7)
2016 (7)
2022 (7)
2010 (6)
2012 (5)
2011 (5)
2008 (5)
2006 (5)
2026 (5)
2025 (5)
2019 (4)
2009 (3)
2023 (3)
2017 (3)

UNIPROT ID/AC

1FEH1_WHEAT (1)
4565.EPlTAEP00000010002 (1)
4565.EPlTAEP00000010027 (1)
4565.EPlTAEP00000010105 (1)
4565.EPlTAEP00000010109 (1)
4565.EPlTAEP00000010115 (1)
4565.Traes_1AL_00485097A.2 (1)
4565.Traes_1AL_00744EBC6.2 (1)
4565.Traes_1AL_0121566F8.1 (1)
4565.Traes_1AL_013C8AF6B1.1 (1)
4565.Traes_1AL_014F29DA6.1 (1)
4565.Traes_1AL_015BAE72C.1 (1)
4565.Traes_1AL_01806281A.1 (1)
4565.Traes_1AL_0226AAD07.1 (1)
4565.Traes_1AL_034B63223.1 (1)
4565.Traes_1AL_036E330F0.1 (1)
4565.Traes_1AL_03D275069.1 (1)
4565.Traes_1AL_0458C8353.1 (1)
4565.Traes_1AL_04A4521BB.2 (1)
4565.Traes_1AL_04EA15F57.1 (1)
4565.Traes_1AL_051FE2815.1 (1)
4565.Traes_1AL_087978D78.1 (1)
4565.Traes_1AL_08A2F5FA4.1 (1)
4565.Traes_1AL_08A7811E1.3 (1)
4565.Traes_1AL_0912DED70.1 (1)
4565.Traes_1AL_093513BF1.1 (1)
4565.Traes_1AL_09486AD47.1 (1)
4565.Traes_1AL_0A1043127.1 (1)
4565.Traes_1AL_0A5A0E0D3.1 (1)
4565.Traes_1AL_0A7711D82.1 (1)

CHEBI ID

CHEBI:189528 (1)
CHEBI:189527 (1)
CHEBI:189523 (1)
CHEBI:189519 (1)
CHEBI:189515 (1)
CHEBI:189507 (1)
CHEBI:189506 (1)
CHEBI:189505 (1)
CHEBI:189504 (1)
CHEBI:189503 (1)
CHEBI:189502 (1)
CHEBI:189500 (1)
CHEBI:189499 (1)
CHEBI:189493 (1)
CHEBI:189492 (1)
CHEBI:189490 (1)
CHEBI:189484 (1)
CHEBI:189483 (1)
CHEBI:189481 (1)
CHEBI:189480 (1)
CHEBI:189479 (1)
CHEBI:189478 (1)
CHEBI:189475 (1)
CHEBI:189473 (1)
CHEBI:189470 (1)
CHEBI:189468 (1)
CHEBI:189464 (1)
CHEBI:189455 (1)
CHEBI:182243 (1)
CHEBI:189448 (1)

Metabolite Name

1-({(1s,4s,6s)-6-isopropyl-3-methyl-4-[2-(4-methyl-1-piperazinyl)-2-oxoethyl]-2-cyclohexen-1-yl}methyl)-3-(3-methoxyphenyl)urea (1)
N-({(2r,4s,5r)-5-[3-(3,4-dimethoxyphenyl)-1-methyl-1h-pyrazol-5-yl]-1-azabicyclo[2.2.2]oct-2-yl}methyl)-2-ethylbutanamide (1)
6-o-[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]-1-o-[(2e)-3-phenyl-2-propenoyl]-beta-d-glucopyranose (1)
4-methoxybenzaldehyde n-[6-(tert-butyl)thieno[3,2-d]pyrimidin-4-yl]hydrazone (1)
4-(4-chlorophenyl)-n-(2-pyridinylmethyl)cyclohexanecarboxamide (1)
4h-1-benzopyran-4-one, 6-beta-d-glucopyranosyl-2,3-dihydro-5,7-dihydroxy-2-(4-hydroxyphenyl)-, (s)- (Hemiphloin) (1)
(3r,4s)-4,6,8-trihydroxy-7-methoxy-3-methyl-3,4-dihydro-1h-isochromen-1-one (1)
1,4:3,6-dianhydro-2,5-dideoxy-2-{[4-(3-fluorophenyl)-2-pyrimidinyl]amino}-5-[(methoxyacetyl)amino]-l-iditol (1)
Cetirizine n-oxide (1)
Adb-pinaca pentanoic acid metabolite (1)
5,8-dihydroxy-4-oxo-1,2,3,4-tetrahydro-1-naphthalenyl 6-o-(3,4,5-trihydroxybenzoyl)-beta-d-glucopyranoside (1)
Methyl (1s,4ar,6s,7r,7as)-1-(beta-d-glucopyranosyloxy)-4a,7-dihydroxy-6-{[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]oxy}-7-methyl-1,4a,5,6,7,7a-hexahydrocyclopenta[c]pyran-4-carboxylate (1)
Methyl 4-{2-cyano-2-[(4-methylphenyl)sulfonyl]vinyl}-2,5-dimethyl-1h-pyrrole-3-carboxylate (1)
N-[(6as,8s)-2-(2,3-dimethylphenyl)-6,12-dioxo-5,6,6a,7,8,9,10,12-octahydropyrido[2,1-c][1,4]benzodiazepin-8-yl]nicotinamide (1)
4-[4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1h,3h-furo[3,4-c]furan-1-yl]-2-methoxyphenyl hexopyranoside (1)
4-[(1s,3as,4r,6ar)-3a-hydroxy-4-(4-hydroxy-3-methoxyphenyl)tetrahydro-1h,3h-furo[3,4-c]furan-1-yl]-2-methoxyphenyl beta-d-glucopyranoside (1)
N4-acetyl sulfamethazine (1)
2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4-oxo-4h-chromen-3-yl 6-o-(6-deoxyhexopyranosyl)-4-o-[(2e)-3-(4-hydroxyphenyl)-2-propenoyl]hexopyranoside (1)
Fr 145237 (1)
Ethyl {(1s,4s,5s)-4-[(isonicotinoylamino)methyl]-5-isopropyl-2-methyl-2-cyclohexen-1-yl}acetate (1)
2-hydroxy-4-(4-hydroxyphenyl)butanoic acid (1)
2-(tert-butylsulfonyl)-3-(3-methylbenzo[b]thiophen-2-yl)acrylonitrile (1)
2-hydroxy-4-methoxy-3-(3-methyl-2-buten-1-yl)-6-[(e)-2-phenylvinyl]benzoic acid (1)
N-(2-fluorophenyl)-2-methyl-6-(trifluoromethyl)nicotinamide (1)
Metazachlor-esa (1)
Aica ribonucleotide (1)
2-[(3s)-1-(cyclohexylmethyl)-3-pyrrolidinyl]-5-fluoro-1h-benzimidazole (1)
N-(4-{(2r,3r)-3-(hydroxymethyl)-4-[(1-methyl-1h-imidazol-2-yl)methyl]-5-oxo-2-morpholinyl}phenyl)-2-methylpropanamide (1)
3-hydroxy-3,5,5-trimethyl-4-(3-oxo-1-buten-1-ylidene)cyclohexyl Beta-d-glucopyranoside (1)
4-((5-(4-nitrophenyl)oxazol-2-yl)amino)benzonitrile (1)

First Public Date

2017 (52)
2024 (19)
2013 (14)
2022 (13)
2020 (12)
2014 (11)
2026 (9)
2023 (9)
2021 (9)
2025 (8)
2019 (8)
2016 (8)
2015 (8)
2018 (7)

Classification

fungi (45)
bacteria (2)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (13)
RNA-seq of non coding RNA (6)
Transcription profiling by SAGE (1)
MicroRNA profiling by array (1)

Release Date

2021 (83)
2022 (70)
2020 (64)
2018 (63)
2023 (58)
2017 (58)
2016 (56)
2014 (56)
2019 (55)
2025 (52)
2015 (48)
2024 (47)
2012 (44)
2013 (41)
2011 (24)
2010 (23)
2008 (20)
2009 (17)
2006 (6)
2007 (6)
2005 (6)
2026 (5)
2003 (5)
2004 (3)
2002 (2)
1999 (2)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

ARC Centre of Excellence in Plant Energy Biology, School of Molecular Sciences, The University of Western Australia, M316, Perth,WA, 6009, Australia (1)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)
College of Life Science, Capital Normal University, Beijing 100048, China (1)
Department of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Ontario, Canada, K1H 8M5 (1)
Department of Genetics, "Luiz de Queiroz" College of Agricculture, University of São Paulo, Piracicaba, Brazil (1)
Department of Life Science and Environmental Biochemistry, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (1)
Donald Danforth Plant Scinece Center (1)
ESALQ (1)
Ghent University VIB (1)
Gregor Mendel Institute of the Austrian Academy of Sciences (1)
Hangshan Univerisity (1)
Henan agricultural university (1)
Henan agriculture university (1)
Institue of Integrative Biology, University of Liverpool (1)
Institute for Plant Sciences, University of Cologne, 50674 Cologne, Germany (1)
Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuchang Moshan (1)
Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, China. (1)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (1)
The University of Hong Kong, Hong Kong (1)
University of Göttingen, Albrecht-von-Haller-Institute for Plant Sciences and Göttingen Center for Molecular Biosciences (GZMB), Department of Plant Biochemistry, 37077 Göttingen, Germany (1)
for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)

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Monocot

Monocot Cambium

PRJNA374584 | ENA

Benzoic acid facilitates ANF in monocot crops by recruiting nitrogen-fixing Paraburkholderia.

Not available

S-EPMC11632831 | biostudies-literature

Genomic and evolutionary aspects of chloroplast tRNA in monocot plants.

Not available

S-EPMC6341768 | biostudies-literature

The genome of Acorus deciphers insights into early monocot evolution.

Not available

S-EPMC10281966 | biostudies-literature

TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders.

Not available

S-EPMC2763876 | biostudies-literature

Loss of Wood Formation Genes in Monocot Genomes.

Not available

S-EPMC6644875 | biostudies-literature

Codon usage and codon pair patterns in non-grass monocot genomes.

Not available

S-EPMC5710610 | biostudies-literature

Monocot tree of life phylotranscriptome analysis

MonAToL Phylotranscriptomics

PRJNA752894 | ENA

Host-adapted enzymatic deconstruction of acetylated xylan enables mutualistic colonization of monocot roots

Intracellular accommodation of beneficial fungi requires host cell wall remodeling that avoids excessive immune activation. The root endophyte Serendipita indica, a generalist mutualist capable of colonizing both monocot and dicot plants, employs a monocot-specific enzymatic module to deconstruct ac...

ORGANISM(S): Serendipita indica DSM 11827

2026-04-20 | PXD075759 | Pride

Identification of universal grass genes and estimates of their monocot-/commelinid-/grass-specificity.

Not available

S-EPMC12098945 | biostudies-literature

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