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Genomics246a7055-8319-4940-900a-135fa7ecf419 - samples
Disease diagnoses of GCAT Cohort participants obtained from electronic health records (EHR), mainly including the time period from 2012 to 2017. Disease diagnoses are codified in ICD-9, and the position of diagnosis refers to primary/secondary diagnoses (up to 14 secondary diagnoses per visit). The ...
EGAD00001007731 | EGA
GenomicsGCAT | Genomes for life: cohort study of the genomes of Catalonia
The GCAT Study have recruited 20 000 participants aged 40–65 years. Participants who agreed to take part in the study completed a self-administered computer-driven questionnaire, and underwent blood pressure, cardiac frequency and anthropometry measurements. For each participant, blood plasma, ...
EGAS00001003018 | EGA
GenomicsGCATcoreSpain V1
4988 samples issued from GCAT cohort, genotyped with MEGAex-Infinium Array, with data for Cr1-22. Plink files with QC but not imputed.
EGAD00010001665 | EGA
GenomicsGCAT-Panel of the Iberian population
This dataset includes the .hap, .legend and .sample files from the GCAT|Panel (Iberian reference panel), built from 785 samples, after QC, from the 808 WGS GCAT cohort, including 30.3M SNVs, 5M Indels and 89K SVs. This resource has been generated using Shapeit4 and WhatsHap software. Technology used...
EGAD00010002153 | EGA
Genomicsena-DATASET-GCAT-07-10-2021-15:43:07:167-35 - samples
This dataset include FASTQ files of 808 samples from GCAT cohort. Technology used HiSeq 4000, read length 150 bp, inner mate distance 300 bp. For each sample the paired -ends are generated in separated files. Each FASTQ is splitted in multiple LANEs and grouped by the Multiplex index.
EGAD00001008201 | EGA
Genomics2404b6a2-b77e-4374-9bef-360638ec1661 - samples
Sex, age at recruitment (2014-2018), and birthdate of GCAT Cohort individuals.
EGAD00001007729 | EGA
Genomicsgcat_catalogue_dataset - samples
This dataset contains genotypes (35.4M of SNVs, Indels and SVs), from 785 samples, after QC filtering, from the 808 WGS GCAT cohort.
EGAD00001007774 | EGA
Genomicsena-DATASET-GCAT-07-10-2021-15:48:18:552-38 - samples
This dataset include BAM files of 808 samples from GCAT cohort. Technology used HiSeq 4000, read length 150 bp, inner mate distance 300 bp. For each sample the paired -ends are generated in separated files. Each FASTQ is splitted in multiple LANEs and grouped by the Multiplex index.
EGAD00001008202 | EGA
GenomicsStructural variants annotations
This resource contains the SV annotations using the AnnotSV tool. The description of annotations can be found in AnnotSV web page https://lbgi.fr/AnnotSV/ or GCAT-BSC web page: http://cg.bsc.es/GCAT_BSC_iberianpanel
EGAD00010002152 | EGA
GenomicsGCATcoreSpain V2
4988 samples issued from GCAT cohort, genotyped with MEGAex-Infinium Array, with data for Cr1-22. Plink files with QC and imputed (SHAPEIT+IMPUTE).
EGAD00010001664 | EGA
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