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GenomicsGCAT | Genomes for life: cohort study of the genomes of Catalonia
The GCAT Study have recruited 20 000 participants aged 40–65 years. Participants who agreed to take part in the study completed a self-administered computer-driven questionnaire, and underwent blood pressure, cardiac frequency and anthropometry measurements. For each participant, blood plasma, ...
EGAS00001003018 | EGA
TranscriptomicsMRE11 Deficiency Increases Sensitivity to Poly(ADP-ribose) Polymerase Inhibition in Microsatellite Unstable Colorectal Cancers.
We have performed bioinformatic approaches to identify the level of enrichment between gene expression profiles characterizing MSI tumors and gene changes induced in vitro by the PARP-1 inhibitor Phenanthridinone and others using the Connectivity Map tool. In a first step, we have anyzed the express...
ORGANISM(S): Homo sapiens 
2011-04-07 | E-GEOD-26682 | biostudies-arrayexpress
TranscriptomicsGlioblastoma-initiating cells from the peritumoral tissue have an invasive phenotype that is dependent on Rac and RhoA activation and downregulation of cytoplasmic p27.
The invasive nature of glioblastoma (GBM) represents a major clinical challenge contributing to poor outcomes. Invasion of GBM into healthy tissue restricts therapeutic access and surgical resection. Therefore, effective anti-invasive strategies of GBM cells can be key to increase the efficacy of ch...
ORGANISM(S): Homo sapiens 
2015-05-13 | E-GEOD-37985 | biostudies-arrayexpress
TranscriptomicsGene expression data from healthy, adjacent normal and tumor colon cells
Gene expression profiles of paired normal adjacent mucosa and tumor samples from 98 individuals and 50 healthy colon mucosae, were obtained through Affymetrix Human Genome U219 Arrays. This dataset is in the context of the COLONOMICS project and to query additional information you can visit the proj...
ORGANISM(S): Homo sapiens 
2014-03-14 | E-GEOD-44076 | biostudies-arrayexpress
GenomicsGCATcoreSpain V1
4988 samples issued from GCAT cohort, genotyped with MEGAex-Infinium Array, with data for Cr1-22. Plink files with QC but not imputed.
EGAD00010001665 | EGA
GenomicsGCAT-Panel of the Iberian population
This dataset includes the .hap, .legend and .sample files from the GCAT|Panel (Iberian reference panel), built from 785 samples, after QC, from the 808 WGS GCAT cohort, including 30.3M SNVs, 5M Indels and 89K SVs. This resource has been generated using Shapeit4 and WhatsHap software. Technology used...
EGAD00010002153 | EGA
Genomics246a7055-8319-4940-900a-135fa7ecf419 - samples
Disease diagnoses of GCAT Cohort participants obtained from electronic health records (EHR), mainly including the time period from 2012 to 2017. Disease diagnoses are codified in ICD-9, and the position of diagnosis refers to primary/secondary diagnoses (up to 14 secondary diagnoses per visit). The ...
EGAD00001007731 | EGA
Genomicsena-DATASET-GCAT-07-10-2021-15:43:07:167-35 - samples
This dataset include FASTQ files of 808 samples from GCAT cohort. Technology used HiSeq 4000, read length 150 bp, inner mate distance 300 bp. For each sample the paired -ends are generated in separated files. Each FASTQ is splitted in multiple LANEs and grouped by the Multiplex index.
EGAD00001008201 | EGA
Genomics2404b6a2-b77e-4374-9bef-360638ec1661 - samples
Sex, age at recruitment (2014-2018), and birthdate of GCAT Cohort individuals.
EGAD00001007729 | EGA
Genomicsgcat_catalogue_dataset - samples
This dataset contains genotypes (35.4M of SNVs, Indels and SVs), from 785 samples, after QC filtering, from the 808 WGS GCAT cohort.
EGAD00001007774 | EGA
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