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ProteomicsComparative analysis of Chrysoporthe cubensis exoproteomes and their specificity for saccharification of sugarcane bagasse
The phytopathogenic fungus Chrysoporthe cubensis is a relevant source of lignocellulolytic enzymes. This work aimed to compare the profile of lignocellulose- degrading proteins secreted by C. cubensis grown under semi-solid state fermentation using wheat bran and sugarcane bagasse. The proteins from...
ORGANISM(S): Fungi Chrysoporthe cubensis 
2024-01-26 | PXD046075 | Pride
Chrysoporthe cubensis  wheat bran  sugarcane bagasse  cazymes  exoproteome  biomass saccharification 
TranscriptomicsNitric oxide-dependent changes in Schistosoma mansoni gene expression
Nitric oxide (NO) is a gaseous intercellular signaling molecule that also plays a role in host-parasite relations. NO acts rapidly, either via regulation of soluble guanylate cyclase, or by direct interactions with enzymes and other proteins, and has also been shown to have effects on gene expressio...
ORGANISM(S): Schistosoma mansoni 
2007-07-04 | E-GEOD-8366 | biostudies-arrayexpress
TranscriptomicsSaccharomyces cerevisiae transcriptome response to overexpression of the Phytophthora sojae Avh110 effector
The oomycete pathogen Phytophthora sojae causes root rot of soybean. During infection, the pathogen is thought to deliver dozens, if not hundreds, of effector proteins into the host to manipulate intracellular systems. Although these pathogen proteins often exhibit similar N-terminal delivery domain...
ORGANISM(S): Saccharomyces cerevisiae 
2021-11-12 | E-MTAB-9566 | biostudies-arrayexpress
ProteomicsThe Antarctic Chlamydomonas sp. UWO241 exhibits constitutively high cyclic electron flow
The Antarctic green alga Chlamydomonas sp. UWO241 (UWO241) survives in the deep photoc zone of the permanently ice-covered Lake Bonney in the McMurdo Dry Valleys. The extreme habitat in its natural environment has given way to unique adaptive mechanisms in this halotolerant psychrophile. One of the ...
ORGANISM(S): Chlamydomonas Sp. Uwo 241 
MSV000084382 | MassIVE
TranscriptomicsSaccharomyces cerevisiae transcriptome response to overexpression of the Phytophthora sojae Avh172 effector
The oomycete pathogen Phytophthora sojae causes root rot of soybean. During infection, the pathogen is thought to deliver dozens, if not hundreds, of effector proteins into the host to manipulate intracellular systems. Although these pathogen proteins often exhibit similar N-terminal delivery domain...
ORGANISM(S): Saccharomyces cerevisiae 
2021-01-01 | E-MTAB-4682 | biostudies-arrayexpress
TranscriptomicsExpression data from E18 mouse dorsal telencephalon
Neurons deficient in both GSK-3 alpha and beta isoforms fail to migrate properly and develop abnormal morphology. In exploring mechanisms, we found no change in Wnt transcriptional target genes. Verified decrease in GSK-3B exon 2 RNA was extracted from presumptive somatosensory cortices of E18 GSK-...
ORGANISM(S): Mus musculus 
2014-07-29 | E-GEOD-58727 | biostudies-arrayexpress
MetabolomicsGNPS - The Antarctic Chlamydomonas sp. UWO241 exhibits constitutively high cyclic electron flow
The Antarctic green alga Chlamydomonas sp. UWO241 (UWO241) survives in the deep photoc zone of the permanently ice-covered Lake Bonney in the McMurdo Dry Valleys. The extreme habitat in its natural environment has given way to unique adaptive mechanisms in this halotolerant psychrophile. One of the ...
ORGANISM(S): Chlamydomonas Sp. Uwo 241 
MSV000084382 | GNPS
Transcriptomicsgene expression profiling of brain metastatic melanoma cell lines
Cerebral metastases occur in a majority of metastatic melanoma patients and are a major cause of mortality. Despite this, there is a poor understanding of the molecules/pathways that lead to the brain-metastatic phenotype. Studies designed to address this deficiency and test novel therapeutic approa...
ORGANISM(S): Homo sapiens 
2012-11-21 | E-GEOD-23601 | biostudies-arrayexpress
TranscriptomicsGene expression in 2,3-Pentanedione Induced Bronchiolitis Oblliterans
Fibrotic and nonfibrotic bronchial tissues were collected from lungs of pentandione exposed rats by laser capture microdissection. Analogous tissue was collected from air-exposed controls. Miroarray analysis revealed a number of DEGs Male Wistar Han rats were exposed to either air or 200 ppm 2,3-pen...
ORGANISM(S): Rattus norvegicus 
2015-03-03 | E-GEOD-52761 | biostudies-arrayexpress
TranscriptomicsMusashi 2 regulates normal hematopoiesis and accelerates leukemogenesis (LSK and LK)
We demonstrate that Msi2 is the predominant form expressed in hematopoietic stem cells (HSC), and its knockdown leads to reduced engraftment and depletion of HSCs in vivo. Overexpression of Msi2 in a mouse model increases HSC cell cycle progression and cooperates with BCR-ABL1 to induce an aggressiv...
ORGANISM(S): Mus musculus 
2010-07-22 | E-GEOD-22774 | biostudies-arrayexpress
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