Mouse embryonic stem cells

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Organisms

Mus musculus (3817)
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unidentified (4)
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Tissue

Embryonic stem cell (241)
Cell culture (137)
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Technology Type

Mass Spectrometry (363)
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SWATH MS (5)
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All-ion fragmentation (4)
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DiaPASEF (3)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
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NMR spectroscopy (1)
ESI (1)
Proteogenomics (1)
Glycoproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (140)
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2019 (338)
2008 (302)
2017 (294)
2018 (293)
2009 (249)
2007 (111)
2006 (50)
2005 (29)
2004 (21)
2003 (1)

UNIPROT ID/AC

Q6ZRP7 (2)
Q8N7R0 (2)
Q01860 (2)
P04637 (2)
OL149_MOUSE (1)
A0A1B0GRF0_MOUSE (1)
Q7TRR2_MOUSE (1)
L7N224_MOUSE (1)
Q3TFZ4_MOUSE (1)
P3_MOUSE (1)
F228A_MOUSE (1)
DPPA4_MOUSE (1)
SE1L3_MOUSE (1)
ESRP1_MOUSE (1)
A2CG24_MOUSE (1)
Q3V0I7_MOUSE (1)
Q8VGZ8_MOUSE (1)
MEIOB_MOUSE (1)
NELL1_MOUSE (1)
Q8VG01_MOUSE (1)
CCD42_MOUSE (1)
CLD19_MOUSE (1)
HSF2_MOUSE (1)
FBXL6_MOUSE (1)
HXD10_MOUSE (1)
UTF1_MOUSE (1)
KRA52_MOUSE (1)
PO5F1_MOUSE (1)
ARRD2_MOUSE (1)
Q80ZR9_MOUSE (1)

ENSEMBL ID

ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000021039 (2)
ENSMUSP00000141097 (2)
ENSMUSG00000032652 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000069525 (1)
ENSMUSG00000090272 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:16919 (7)
CHEBI:15428 (6)
CHEBI:17154 (6)
CHEBI:18012 (6)
CHEBI:32816 (6)
CHEBI:15354 (6)
CHEBI:17822 (5)
CHEBI:26271 (5)
CHEBI:25094 (5)
CHEBI:22653 (5)
CHEBI:16811 (5)
CHEBI:28300 (5)
CHEBI:17562 (5)
CHEBI:25017 (5)
CHEBI:17148 (5)
CHEBI:15727 (5)
CHEBI:27266 (5)
CHEBI:7916 (5)
CHEBI:16449 (5)
CHEBI:29016 (5)
CHEBI:78320 (5)
CHEBI:27897 (5)
CHEBI:17768 (4)
CHEBI:18066 (4)
CHEBI:16552 (4)
CHEBI:18132 (4)
CHEBI:16238 (4)
CHEBI:16436 (4)
CHEBI:27570 (4)
CHEBI:18186 (4)

Metabolite Name

Creatine (6)
Betaine (5)
Cytosine (5)
Taurine (4)
Proline (4)
Methionine (4)
Creatine (4)
Valine (4)
Putrescine (4)
Spermidine (4)
Thiamine (4)
Pyridoxine (4)
Adenine (4)
Creatinine (4)
Glycerophosphocholine (4)
Cysteinylglycine (3)
Acetylphosphate (3)
Thioproline (3)
Prolylglycine (3)
Gamma-glutamylphenylalanine (3)
Gamma-glutamylglutamate (3)
3-methylcytidine (3)
Oleoyl ethanolamide (3)
Linoleamide (3)
Acetophenone (3)
Glycine (3)
Tryptophan (3)
Serine (3)
Pseudouridine (3)
Nicotinamide (3)

First Public Date

2014 (689)
2024 (498)
2025 (468)
2023 (413)
2020 (361)
2019 (357)
2022 (356)
2021 (356)
2026 (313)
2017 (290)
2018 (277)
2013 (234)
2015 (208)
2016 (176)
2012 (4)
2011 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Department of Medicine, Columbia University Irving Medical Center (4)
Associate Professor of Genetics Stanford University USA (3)
Research Group Leader Bulut-Karslioglu lab Dept. of Genome Regulation Max Planck Institute for Molecular Genetics Ihnestrasse 63-73 14195 Berlin GERMANY (3)
Molecular Biology, Radboud Institute for Molecular Life Sciences (RIMLS), Nijmegen, the Netherlands (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (3)
Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology - Hellas (FORTH), 100, Plastira Str., 70013 Heraklion, Crete, Greece. (3)
School of Biosciences Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (3)
University of Dundee, School of Life Sciences (3)
Center for Genomic Regulation Differentiation and Cancer Passeig Maritim 37-49 Barcelona 08003 SPAIN (2)
Department of Proteomics and Signal Transduction, Max Planck Institute for Biochemistry, Martinsried, Germany (2)
Novo Nordisk Foundation Center for Protein Research (CPR), University of Copenhagen, Copenhagen, Denmark. (2)
Laboratory of Genome Structure and Function Department of Biological Sciences Graduate School of Science The University of Osaka (2)
Howard Hughes Medical Institute NYU School of Medicine-Smilow Research Center Biochemistry Department (2)
DNA damage responses and cancer lab Department of Human Genetics Leiden University Medical Center Eithovenweg 20 2333ZC Leiden The Netherlands (2)
Department of Genetic Medicine and Development, Faculty of Medicine, University of Geneva, Switzerland (2)
Ottawa Hospital Research Institute (2)
Babraham Research Campus, Cambridge, UK (2)
Department of Molecular Biology, Radboud Institute for Molecular Life Sciences, Radboud University, Nijmegen, The Netherlands (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
German Cancer Research Center (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China. (2)
Peter MacCallum Cancer Centre, Melbourne, Australia Department of Anatomy and Physiology, The University of Melbourne, Melbourne, VIC, Australia (2)
Max Planck Institute for Molecular Genetics Department of Genome Regulation Ihnestraße 63-73 14195 Berlin, Germany (2)
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (2)
Nankai university (2)
Babraham Institute Cambridge UK (2)
Department of Biology II and Center for Integrated Protein Science Munich (CIPSM), Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany (2)
Nankai University (2)
Max Delbrück Center for Molecular Medicine in the Helmholtz Association (2)

IsPrivate

False (3)

Submitter Keywords

Manuscript Accepted (1)

Modification

N6 (4)
2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
4 (3)
N6-dimethyl-L-lysine (2)

Study type

Transcription profiling by array (2827)
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Methylation profiling by high throughput sequencing (141)
RNA-seq of coding RNA from single cells (130)
Other (89)
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Unknown experiment type (42)
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2003 (16)
2002 (14)
2000 (11)
2001 (10)
1998 (4)
1999 (2)
1997 (1)

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Metabolomic analysis of mouse embryonic fibroblasts, embryonic stem cells, and induced pluripotent stem cells

Not available

ORGANISM(S): Mus musculus

ST000003 | MetabolomicsWorkbench

TAF4 immunoprecipitation from mouse embryonic stem cells

TAF4 directed immunoprecipitation of the the Pre-initiation complex from mouse embryonic stem cells with or without depletion of TATA-box binding protein (TBP).

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2022-05-27 | MSV000089562 | MassIVE

Discovery of Klf2 Interactors in Mouse Embryonic Stem Cells by Immunoprecipitation-Mass Spectrometry Utilizing Exogenously Expressed Bait

Krüppel-like factor 2 (Klf2) is a DNA-binding transcription factor that regulates embryonic stem cell-specific gene expression. Transcription cofactors such as p300 acetyltransferases and Erk kinases interact with Klf2, providing an additional layer of transcription regulation in embryonic stem cell...

ORGANISM(S): Mus Musculus (mouse)

2021-09-20 | PXD022123 | JPOST Repository

Transcriptional profiling of 7SK knockdown in mouse embryonic stem cells

Transcriptome profiling of mouse embryonic stem cells following antisense knockdown of the non-coding RNA 7SK.

ORGANISM(S): Mus musculus

2013-09-09 | E-MTAB-1585 | biostudies-arrayexpress

Expression data from mouse embryonic stem cells

Analysis of the transcriptome of ß-catenin flox/- mES cells in comparison with ß-catenin null mES cells or ß-catenin null mES cells stably transfected with an E-cadherin-?-catenin fusion protein. Expression assay was performed using the Affymetrix GeneChip Mouse Gene 1.0 ST array. The experiment inc...

ORGANISM(S): Mus musculus

2013-05-03 | E-GEOD-44543 | biostudies-arrayexpress

Target genes of BRG1 in mouse embryonic stem cells

BRG1-SWI/SNF complex is an important chromatin remodeling complex that involved in various biological processes. Here we described the genome-wide binding of histone acetylation upon BRG1 depletion in mouse embryonic stem cells. Mouse embryonic stem cells were treated with either scrambled siRNA or ...

ORGANISM(S): Mus musculus

2015-04-28 | E-GEOD-57472 | biostudies-arrayexpress

Identifying targets of Klf2, Klf4, Klf5 and p53 in mouse embryonic stem cells

This SuperSeries is composed of the following subset Series: GSE9774: Klf2, Klf4, Klf5 and p53 in mouse embryonic stem cells GSE9775: To identify the target genes of Klf2, Klf4 and Klf5 in mouse embryonic stem cells. Keywords: SuperSeries Refer to individual Series

ORGANISM(S): Mus musculus

2010-06-25 | E-GEOD-9535 | biostudies-arrayexpress

MicroRNA profiling of mouse embryonic stem cells during retinoic acid-induced differentiation

Changes in microRNA expression profile during retinoic acid-induced differentiation of mouse embryonic stem cells.

ORGANISM(S): Mus musculus

2007-04-01 | E-MEXP-977 | biostudies-arrayexpress

Mouse Androgenetic Haploid Embryonic Stem Cells Support Targeted Gene Transmission to Progeny

This SuperSeries is composed of the following subset Series: GSE35785: mRNA expression data from AG-haESC, E14 and MEF GSE35786: CGH analysis of AG-haESCs (androgenetic haploid embryonic stem cells) Refer to individual Series

ORGANISM(S): Mus musculus

2012-04-26 | E-GEOD-35787 | biostudies-arrayexpress

Distinct roles of Tet1 and Tet2 in mouse embryonic stem cells (RNA-Seq)

The TET proteins TET1, TET2 and TET3 constitute a new family of dioxygenases that utilize molecular oxygen and the cofactors Fe(II) and 2-oxoglutarate to convert 5-methylcytosine (5mC) to 5-hydroxy-methylcytosine (5hmC) and further oxidation products in DNA1-5. Here we show that Tet1 and Tet2 have d...

ORGANISM(S): Mus musculus

2014-01-16 | E-GEOD-50198 | biostudies-arrayexpress

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