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ProteomicsPeptide analysis in human cell lines via high-resolution MRM (PRM) for the annotation of non-canonical open reading frames
A major scientific drive is to characterize the protein-coding genome, which is a primary basis for studying human health. But the fundamental question remains: what has been missed in prior analyses? Over the past decade, the translation of non-canonical open reading frames (ncORFs) has been obse...
ORGANISM(S): Homo sapiens (Human) 
2026-02-17 | PXD066599 | Pride
Cell lines Mrmhr (prm) Human Non-canonical open reading frames 
ProteomicsHuman tissue microsomed by MRM, MRMHR and SWATH
The purpose of the present study was to examine simultaneously the absolute protein amounts of 152 membrane and membrane-associated proteins, including 30 metabolizing enzymes and 107 transporters, in pooled microsomal fractions of human liver, kidney and intestine by means of SWATH-MS with stable i...
ORGANISM(S): Homo Sapiens (human) 
2018-01-01 | PXD008265 | JPOST Repository
ProteomicsLocalization and Quantification of Post-Translational Modifications of Proteins Using Electron Activated Dissociation Fragmentation on the ZenoTOF 7600 System
Protein post-translational modifications (PTMs) are crucial and dynamic players in a large variety of cellular processes and signaling, and proteomic technologies have emerged as the method of choice to profile PTMs. However, these analyses remain challenging due to potential low PTM stoichiometry, ...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2023-04-16 | MSV000091722 | MassIVE
ProteomicsEnhancing glycopeptide annotation and glycan localization using the EAD implementation of hot electron capture dissociation through a multiplexed parallel reaction monitoring design of experiment
We present an optimized electron activated dissociation (EAD) methodology for liquid chromatography-tandem mass spectrometry (LC-MS/MS) based characterization of N- and O-glycopeptides. Recombinant human erythropoietin (rhEPO) was used as a model glycoprotein in this study. Applying a full factorial...
ORGANISM(S): Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus) 
2025-10-23 | PXD063177 | Pride
Glycoproteomics Parallel reaction monitoring Electron activated dissociation Design of experiments Lc-ms/ms 
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