Ms3 - OmicsDI

Show results for

Proteomics (1729)
Unknown (238)
Genomics (36)
Metabolomics (28)
Transcriptomics (5)
Other (3)

Organisms

Schizosaccharomyces pombe (1639)
Sinorhizobium meliloti BL225C (1639)
Sus scrofa domesticus (1639)
Saccharomyces cerevisiae (1639)
Staphylococcus aureus (1639)
Rattus norvegicus (1639)
Escherichia coli (1639)
Homo sapiens (1639)
Shigella flexneri (1639)
Allexis (1639)
Shigella (1639)
Zea mays (1639)
Medicago truncatula (1639)
Listeria monocytogenes (1639)
Entamoeba histolytica HM-1:IMSS-A (1639)
Solanum tuberosum (1639)
Arabidopsis thaliana (1639)
Mus musculus (1639)
Methylohalobius crimeensis 10Ki (1638)
Meleagris gallopavo (1638)
Homo sapiens (5)
Arabidopsis thaliana (3)
cellular organisms (3)
BTO:0000214 (2)
Fusarium sinicum (2)
Streptomyces sp. (1)
Panulirus argus (1)
Rattus norvegicus (1)
Danio rerio (1)
Mus musculus (1)

Organisms

Carnobacterium jeotgali MS3 (26)
Dickeya zeae (2)
Homo sapiens (2)
Agarivorans sp. MS3-6 (1)
Clostridiaceae bacterium MS3 (1)
Priestia aryabhattai (1)
Morus alba (1)

Repository

pride (1639)
MassIVE (77)
ENA (36)
MetaboLights (17)
GNPS (11)
jPOST (8)
biostudies-arrayexpress (4)
iProX (4)
GPMDB (2)
PAXDB (2)
geo (1)

Tissue

Cell culture (456)
Epithelial cell (117)
Brain (101)
Permanent cell line cell (61)
Liver (61)
Heart (46)
T cell (40)
Blood (40)
Cell suspension culture (38)
Lung (37)
B cell (35)
Fibroblast (34)
Blood cell (33)
Stem cell (32)
Kidney (30)
Macrophage (28)
Blood plasma (28)
Colon (27)
Bone marrow (24)
Embryo (23)
Spleen (22)
Primary cell (21)
Embryonic stem cell (17)
Early embryonic cell (17)
Plant cell (15)
Leukocyte (15)
Monocyte (15)
Skin (14)
Hepatocyte (13)
Whole body (11)

Disease

Disease free (41)
Acute leukemia (40)
Breast cancer (27)
Colon cancer (23)
Alzheimer's disease (19)
Lymphoma (18)
Cervix carcinoma (15)
Parkinson's disease (13)
Malignant neoplasm of ovary (11)
Prostate adenocarcinoma (10)
Cardiovascular system disease (10)
Type 2 diabetes mellitus (10)
Pancreatic ductal adenocarcinoma (9)
Chronic lymphocytic leukemia (9)
Melanoma (8)
Multiple myeloma (7)
Acute myeloid leukemia (7)
Brain cancer (7)
Lung cancer (6)
Chronic myeloid leukemia (6)
Neuroblastoma (6)
COVID-19 (6)
Non-small cell lung carcinoma (5)
Plasmodium falciparum malaria (5)
Cell type cancer (5)
Frontotemporal dementia (4)
Brain glioblastoma multiforme (4)
Human immunodeficiency virus infectious disease (4)
Pancreatic cancer (4)
Not Available (2)

Technology Type

Mass Spectrometry (1639)
Shotgun proteomics (1028)
Bottom-up proteomics (377)
Data-dependent acquisition (221)
Affinity purification coupled with mass spectrometry proteomics (101)
Chemical cross-linking coupled with mass spectrometry proteomics (97)
Top-down proteomics (35)
Mass spectrometry (15)
SRM/MRM (12)
SWATH MS (11)
Gel-based experiment (11)
Data-independent acquisition (4)
Mass spectrometry assay (2)
MSE (2)
All-ion fragmentation (2)
Metaproteomics (1)
Glycoproteomics (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

Orbitrap Fusion (37)
Orbitrap Fusion Lumos (31)
Orbitrap Eclipse (13)
LTQ Orbitrap Elite (4)
Orbitrap Ascend (3)
Instrument (2)
Orbitrap Astral (2)
TimsTOF (2)
Q Exactive (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Direct infusion MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Orbitrap ID-X (1)
LTQ Orbitrap (1)
Orbitrap Lumos (1)
Stellar (1)
Orbitrap Fusion ETD (1)
LTQ Orbitrap XL (1)
Orbitrap Exploris 480 (1)
Thermo LTQ XL linear ion trap (1)
Bruker Esquire 6000 (1)
QTRAP 6500 (Applied Biosystems) (1)
QTRAP 5500 (Applied Biosystems) (1)
Xevo TQ MS (Waters) (1)
LTQ Orbitrap XL (Thermo Scientific) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2023 (244)
2025 (237)
2021 (234)
2024 (211)
2022 (207)
2026 (182)
2020 (166)
2019 (110)
2018 (78)
2017 (41)
2016 (21)
2015 (17)
2014 (6)
2013 (2)
2010 (2)
2009 (1)

UNIPROT ID/AC

TM253_HUMAN (2)
RSAD2_HUMAN (2)
LRC55_HUMAN (2)
FIGLA_HUMAN (2)
CD320_HUMAN (2)
BEX4_HUMAN (2)
MCH_HUMAN (2)
B3GN9_HUMAN (2)
OCEL1_HUMAN (2)
VWC2L_HUMAN (2)
YPEL4_HUMAN (2)
PNOC_HUMAN (2)
GLDN_HUMAN (2)
VOPP1_HUMAN (2)
MAML3_HUMAN (2)
PAQR8_HUMAN (2)
CAH10_HUMAN (2)
CCD78_HUMAN (2)
MTG8_HUMAN (2)
TM59L_HUMAN (2)
MPP9_HUMAN (2)
BRF2_HUMAN (2)
CNIH1_HUMAN (2)
MSMB_HUMAN (2)
CAC1A_HUMAN (2)
NCKX3_HUMAN (2)
PTN5_HUMAN (2)
CCG2_HUMAN (2)
ABCA7_HUMAN (2)
CHIN_HUMAN (2)

CHEBI ID

CHEBI:30769 (8)
CHEBI:15741 (7)
CHEBI:16704 (5)
CHEBI:16335 (5)
CHEBI:6650 (5)
CHEBI:48131 (4)
CHEBI:18012 (4)
CHEBI:28300 (4)
CHEBI:17368 (4)
CHEBI:30915 (4)
CHEBI:18186 (4)
CHEBI:30813 (3)
CHEBI:15674 (3)
CHEBI:30805 (3)
CHEBI:28875 (3)
CHEBI:17553 (3)
CHEBI:17053 (3)
CHEBI:15843 (3)
CHEBI:30887 (3)
CHEBI:18107 (3)
CHEBI:15891 (3)
CHEBI:18132 (3)
CHEBI:17509 (3)
CHEBI:15354 (3)
CHEBI:17750 (3)
CHEBI:17659 (3)
CHEBI:17596 (3)
CHEBI:16856 (3)
CHEBI:27897 (3)
CHEBI:17858 (3)

Metabolite Name

Succinic acid (3)
Malic acid (3)
Glutamic acid (3)
Tartaric acid (2)
Isocitric acid (2)
5-Methyluridine (2)
Glutathione (2)
Lactic acid (2)
L-tyrosine (2)
L-aspartic acid (2)
L-proline (2)
Citric acid (2)
Undecanoic acid (2)
Fumaric acid (2)
Decanoic acid (2)
4-Hydroxybenzaldehyde (2)
Arachidonic acid (2)
Citric acid (2)
Arginine (2)
Asparagine (2)
Uridine (2)
Taurine (2)
Adenosine (2)
Suberic acid (2)
Aspartic acid (2)
UDP (2)
Ammonium adduct of fucosylisoglobotriose (1)
Fucosylisoglobotriose (1)
In-source fragment of isoglobotriose (1)
Ammonium adduct of isoglobotriose (1)

First Public Date

2020 (19)
2019 (6)
2025 (5)
2024 (2)
2014 (2)
2016 (1)
2013 (1)

Classification

bacteria (2)

Modification

Not available (4)
N6 (3)
4-tetrahydrothiazine-3-carboxylic acid (2)
79.966331 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
57.021464 (1)

Study type

Transcription profiling by array (3)
RNA-seq of coding RNA (1)

Release Date

2020 (33)
2022 (29)
2018 (26)
2021 (23)
2024 (22)
2019 (20)
2025 (16)
2023 (14)
2016 (13)
2017 (11)
2014 (6)
2012 (6)
2009 (5)
2013 (3)
2026 (3)
2015 (3)
2011 (3)
2010 (2)
2008 (2)
2006 (2)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (74)
Harvard Medical School (16)
The Institute of Cancer Research (15)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (12)
Functional Proteomics, ICR (11)
The Institute of Cancer Research, London (9)
Cambridge Institute for Medical Research, University of Cambridge (8)
Institute of Biochemistry II, Faculty of Medicine, Goethe University, Frankfurt am Main, Germany Frankfurt Cancer Institute, Frankfurt am Main, Germany Cardio-Pulmonary Institute, Frankfurt am Main, Germany (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
Institute of Cancer Research, London (7)
Wellcome Trust Sanger Institute (7)
School of Biochemistry, Faculty of Life Sciences, University of Bristol,UK (6)
Finley and Gygi lab Cell Biology Department Harvard Medical School US (6)
Department of Cell Biology, Harvard Medical School (6)
University of Bristol (6)
King's College London (6)
Cornell University (6)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
Department of Chemistry, The Scripps Research Institute, La Jolla, CA, USA (5)
Department of Chemistry, Scripps Research (5)
Scripps Research (5)
Proteomics Core Facility, University of Gothenburg (5)
The University of Melbourne (5)
Vividion Therapeutics (4)
Department of Cell Biology, Harvard Medical School, USA (4)
Department of Biochemistry, University of Cambridge, UK (4)
Department of Clinical Science, University of Bergen, Norway (4)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (4)
Cell Biology Department Harvard Medical School (4)
Chemical Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA (4)

2039 Results

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