Mse - OmicsDI

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Unknown (995)
Proteomics (493)
Metabolomics (142)
Transcriptomics (45)
Genomics (36)
Clinical (10)
Genomic (1)

Organisms

Schizosaccharomyces pombe (484)
Oryza sativa Indica Group (484)
Sinorhizobium meliloti BL225C (484)
Sus scrofa domesticus (484)
Ostreococcus tauri (484)
Saccharomyces cerevisiae (484)
Staphylococcus aureus (484)
Rattus norvegicus (484)
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Cyanophora paradoxa (484)
Entamoeba histolytica (484)
Physcomitrium patens (484)
Methylohalobius crimeensis 10Ki (484)
Homo sapiens (484)
Homo sapiens (19)
Mus musculus (13)
Streptomyces coelicolor (6)
Metallosphaera sedula (4)
Metallosphaera sedula DSM 5348 (1)
Populus alba (1)
Pan troglodytes (1)
Streptomyces coelicolor A3(2) (1)
Triticum aestivum (1)
Candida albicans (1)
Rattus norvegicus (1)
Notata (1)
Oryctolagus cuniculus (1)
Saccharomyces cerevisiae (1)
Escherichia coli (1)
Bos taurus (1)

Organisms

Metallosphaera sedula (10)
Homo sapiens (6)
Mus musculus (4)
Fagopyrum esculentum (3)
Metallosphaera sedula DSM 5348 (1)
Anopheles (1)
Fagopyrum esculentum subsp. esculentum (1)
Zoysia japonica (1)
mouse gut metagenome (1)

Repository

pride (484)
MetaboLights (131)
biostudies-arrayexpress (42)
ENA (32)
geo (7)
MassIVE (7)
GNPS (6)
NODE (5)
dbGaP (1)
iProX (1)
PanoramaPublic (1)

Tissue

Cell culture (57)
Plant cell (25)
Blood plasma (21)
Leaf (20)
Brain (19)
Epithelial cell (18)
Permanent cell line cell (14)
Blood serum (13)
Fibroblast (10)
Oligodendrocyte (8)
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Blood cell (6)
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Urine (5)
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Shoot (4)
Cell suspension culture (4)
Root (4)
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HeLa cell (4)
Whole body (4)
Leaf (2)
Root (2)

Disease

Breast cancer (11)
Cardiovascular system disease (7)
Neoplasms (5)
COVID-19 (5)
Disease free (5)
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Colorectal Neoplasms (4)
Malignant neoplasm of ovary (4)
Paracoccidioidomycosis (3)
Prostate adenocarcinoma (3)
Parkinson's disease (3)
Paranoid schizophrenia (2)
Miscarriage (2)
Histoplasmosis (2)
Celiac disease (2)
Oropharynx cancer (2)
Toxoplasmosis (2)
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Neuroblastoma (2)
Human immunodeficiency virus infectious disease (2)
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Brain cancer (2)
Alzheimer's disease (2)
Schizophrenia (2)
Amyotrophic lateral sclerosis (2)
Acute leukemia (2)
Chronic myeloid leukemia (1)
Normal (1)
Endometrial Neoplasms (1)
Lesion of sciatic nerve (1)

Technology Type

Mass Spectrometry (484)
MSE (240)
Shotgun proteomics (146)
HDMSE (120)
Mass spectrometry (100)
Bottom-up proteomics (50)
Gel-based experiment (32)
Mass spectrometry assay (30)
All-ion fragmentation (16)
Data-independent acquisition (16)
Affinity purification coupled with mass spectrometry proteomics (14)
Top-down proteomics (11)
Data-dependent acquisition (9)
Chemical cross-linking coupled with mass spectrometry proteomics (8)
SWATH MS (7)
SRM/MRM (4)
PAcIFIC (2)
Mass spectrometry imaging (2)
RNA mass spectrometry (2)
NMR spectroscopy (1)
Glycoproteomics (1)
Affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (58)
Liquid Chromatography MS - negative - reverse phase (50)
Liquid Chromatography MS - positive - reverse-phase (16)
Liquid Chromatography MS - negative - reverse-phase (16)
Liquid Chromatography MS - positive - hilic (15)
Liquid Chromatography MS - negative - hilic (13)
Xevo G2 QTOF (Waters) (7)
Xevo G2 Q-Tof (6)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (6)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (4)
Vion IMS QTof (3)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Liquid Chromatography MS - negative - HILIC (3)
Liquid Chromatography MS - positive - HILIC (3)
Illumina HiSeq 4000 (2)
SYNAPT G2-Si (2)
Synapt G2 HDMS (2)
Liquid Chromatography MS - Negative (LC-MS (Neg)) (2)
Liquid Chromatography MS - Positive (LC-MS (Pos)) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
SYNAPT G2 HDMS (Waters) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Xevo QTof MS (Waters) (2)
ScanArray 4000 [PerkinElmer] (1)
HILIC_Pos_SYNAPT-G2_Waters (1)
HILIC_Neg_SYNAPT-G2_Waters (1)
RP_Neg_SYNAPT-G2_Waters (1)
RP_Pos_SYNAPT-G2_Waters (1)

Publication Date

2025 (92)
2026 (87)
2022 (80)
2024 (63)
2023 (63)
2021 (57)
2020 (53)
2019 (37)
2018 (37)
2017 (19)
2016 (17)
2015 (14)
2014 (11)
2013 (11)
2010 (10)
2009 (5)
2012 (4)
2008 (4)
2006 (4)
2005 (3)
2007 (2)
2011 (2)

CHEBI ID

CHEBI:16828 (20)
CHEBI:28875 (16)
CHEBI:28716 (15)
CHEBI:17295 (15)
CHEBI:17351 (15)
CHEBI:16919 (15)
CHEBI:17368 (15)
CHEBI:30805 (14)
CHEBI:17895 (14)
CHEBI:16467 (14)
CHEBI:15891 (14)
CHEBI:16196 (13)
CHEBI:16566 (13)
CHEBI:16704 (13)
CHEBI:17858 (13)
CHEBI:28842 (12)
CHEBI:15756 (12)
CHEBI:17568 (12)
CHEBI:17596 (12)
CHEBI:17748 (12)
CHEBI:16235 (12)
CHEBI:72998 (11)
CHEBI:27732 (11)
CHEBI:16414 (11)
CHEBI:15843 (11)
CHEBI:17203 (11)
CHEBI:16015 (11)
CHEBI:16347 (11)
CHEBI:22470 (10)
CHEBI:17992 (10)

Metabolite Name

L-Tryptophan (19)
Thymidine (18)
L-Histidine (17)
Sulfate (16)
9,12,13-TriHOME (16)
L-Tyrosine (16)
Guanine (16)
Xanthine (16)
Inosine (16)
L-Olivosyl-oleandolide (15)
Azelaic acid (15)
Creatine (15)
1,11-Undecanedicarboxylic acid (14)
Succinic acid (14)
Sebacic acid (14)
L-Proline (14)
Taurine (14)
L-Phenylalanine (14)
Guanosine (14)
Sucrose (14)
Oleandolide (13)
Tobramycin (13)
11-Dehydro-thromboxane B2 (13)
DCMP (13)
Cholic acid (13)
Dodecanoic acid (13)
Dodecanedioic acid (13)
Deoxyuridine (13)
Creatinine (13)
L-Isoleucine (13)

First Public Date

2014 (14)
2016 (4)
2026 (3)
2021 (3)
2024 (2)
2020 (2)
2015 (2)
2025 (1)
2019 (1)

Modification

57.02146 (3)
15.99491 (3)
57.0215 (2)
15.9949 (2)
-17.0266 (2)
203.0794 (2)
0.984 (2)
Not available (2)
144.1021 (1)
144.1059 (1)
162.0538 (1)
226.0776 (1)
210.1984 (1)
188.033 (1)
783.1415 (1)
-18.0106 (1)
58.0055 (1)
43.9898 (1)
144.0996 (1)
450.2752 (1)
99.0684 (1)
127.0633 (1)
43.0058 (1)
79.9663 (1)
14.0156 (1)
162.0528 (1)
14.0157 (1)
229.014 (1)
236.1572 (1)
283.2297 (1)

Study status

Completed (4)
Active, not recruiting (3)
Withdrawn (1)
Terminated (1)
Recruiting (1)

Study type

Transcription profiling by array (22)
Interventional (10)
ChIP-chip by array (9)
ChIP-seq (4)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2025 (213)
2024 (137)
2022 (133)
2023 (126)
2021 (100)
2020 (54)
2018 (47)
2019 (44)
2017 (33)
2026 (22)
2016 (21)
2014 (19)
2015 (17)
2013 (16)
2012 (13)
2010 (11)
2011 (6)
2009 (5)
2008 (5)
2006 (5)
2005 (4)
2007 (2)
2004 (2)
2002 (1)
2001 (1)

Lab affiliation

School of Pharmacy, Sungkyunkwan University, South Korea (5)
Yale Cancer Biology Institute (5)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark (4)
School of Life Sciences, The Chinese University of Hong Kong (4)
Federal University of Goias (4)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (4)
Biochemistry and molecular biology department, Universidade Federal de Goias, Brazil (4)
Clinical Proteomics Facility, Medical Biochemistry, Academic Medical Center, University of Amsterdam (3)
Proteomics and Metabolomics Unit, Monzino Cardiologic Center, IRCCS, Milan, Italy (3)
Weizmann Institute of Science, Israel (3)
Research Centre for Genetic Engineering and Biotechnology “Georgi D Efremov”, Macedonian Academy of Sciences and Arts, Skopje, Krste Misirkov 2, 1000 Skopje, Republic of North Macedonia (3)
Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Philipps-University Marburg, 35043 Marburg, Germany (3)
NovAliX, Department of Biophysics, 16 Rue d’Ankara, 67000, Strasbourg, France; orcid.org/0000-0001-6229-4524 (3)
Northeastern University (3)
University of Southampton (3)
AmsterdamUMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, The Netherlands (3)
Biomedical Research Center, Slovak Academy of Sciences (2)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK (2)
ESALQ (2)
School of Biological and Behavioural Sciences Queen Mary University of London (2)
Unit of Proteomics- Centro Cardiologico Monzino IRCCS (2)
Dept. of Biochemistry, Laboratory of Neuroproteomic, Biology Institute, Brazil (2)
Ruhr-Universität Bochum AG Angewandte Mikrobiologie Universitätsstraße 150 44780 Bochum Raum: ND 06/748 Tel.: +49 234 32 23102 (2)
Proteomics Group Max Planck Institute of Experimental Medicine Hermann-Rein-Str. 3 37075 Goettingen, Germany Tel: +49-551-3899313 Fax: +49-551-3899323 (2)
Department of Cell Biology, Center of Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV-IPN), Av. Instituto Politécnico Nacional 2508, CP 07360 Ciudad de México (CDMX), México. Tel.: +52 55 5747 3354 (2)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (2)
Chloé Martens, Ph.D Chercheuse Qualifiée - FRS.FNRS Group Leader Structure and Function of Biological Membranes - Chemistry Department chloemartenslab.com - sfmb.ulb.be Phone :+32 2 650 53 83 Université Libre de Bruxelles - Campus Plaine. Building BC, Room 1C4 110 - Boulevard du Triomphe, Accès 2 1050 Brussels - Belgium (2)
Department of Chemistry, King’s College London, SE1 1DB, London, UK Faculty of Biology, Medicine and Health, School of Biological Sciences, The University of Manchester, M13 9PT, Manchester, UK Manchester Institute of Biotechnology, The University of Manchester, M1 7DN, Manchester, UK (2)
Institute of Pharmacology and Structural Biology (IPBS), CNRS, Toulouse (2)
Department of Microbial Physiology and Molecular Biology, Institute of Microbiology, University of Greifswald (2)

Location

United States (9)
Canada (6)
Spain (4)
Italy (4)
France (4)
South Korea (4)
Australia (3)
United Kingdom (3)
Belgium (3)
Denmark (2)
Poland (2)
Hungary (2)
Germany (2)
Japan (2)
New Zealand (1)
Taiwan (1)
Turkey (1)
Austria (1)
China (1)
Switzerland (1)
Sweden (1)

Keyword

Durvalumab (6)
Leucovorin (3)
Fluorouracil (3)
MSS-CRC (2)
Colorectal (2)
Bevacizumab (2)
Oxaliplatin (2)
Melanoma and other tumors (1)
Microsatellite (1)
AZD5305 (1)
Datopotamab deruxtecan (1)
Flourouracil (5-FU) (1)
TROPION-PanTumor03 (1)
Datopotamab Deruxtecan (Dato-DXd) (1)
Solid Tumours (1)
Antibody-drug conjugate (ADC) (1)
Trophoblast cell surface protein 2 (TROP2) (1)
Microsatellite stable (1)
T-DXd (1)
DS-8201a (1)
Histology Agnostic (1)
Abiraterone Acetate (1)
AZD4635 (1)
Oleclumab (1)
Enzalutamide (1)
IPH2201 (1)
Colorectal, colon, CRC, solid tumors, check point inhibitors, immunotherapy, metastatic (1)
AZD8853 (1)
First-in-Human (1)
Growth Differentiation Factor-15 (GDF-15) (1)

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Ocotea dataset project - UNIFAL

60 Ocotea crude plant extracts LC-HRMS/DIA-MSe metabolomics data

ORGANISM(S): Ocotea (ncbitaxon:63801)

MSV000093006 | MassIVE

Metallosphaera sedula strain:DSM 5348 Mse-2b

Metallosphaera sedula DSM 5348 Mse-2b

PRJNA262401 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-3b

Metallosphaera sedula DSM 5348 Mse-3b

PRJNA262405 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-3a

Metallosphaera sedula DSM 5348 Mse-3a

PRJNA262406 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-4

Metallosphaera sedula DSM 5348 Mse-4

PRJNA262407 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-1

Metallosphaera sedula DSM 5348 Mse-1

PRJNA262397 | ENA

Metallosphaera sedula strain:DSM 5348 Mse-2a

Metallosphaera sedula DSM 5348 Mse-2a

PRJNA262402 | ENA

MSE quantified stroma proteome

Label-free protein quantification has developed into an attractive alternative to isotopic labeling for the quantification of proteins by mass spectrometry. Recently, the suite of label-free quantification strategies was expanded by LC-MSE–based absolute and relative protein quantification. We repor...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2016-04-14 | PXD000446 | Pride

MSE vs IM-MSE comparison - The experiment was conducted to compare the MSE and IM-MSE acquisiton modes

The experiment was conducted to compare the MSE and IM-MSE acquisiton modes as well as to find the optimal on column loading. This was done using 1DLC and cytosolic e coli digest.Raw data were processed and searched using Proteinlynx Global Server version 3.0. The following parameters were used to g...

ORGANISM(S): Escherichia coli

2013-02-18 | PXD000150 | Pride

E coli Mse Lc-ms/ms

MidBody Proteomics Mse raw data

This is the submission of the raw Mse waters data file obtained from Mid Body proteomics.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-05-20 | MSV000083826 | MassIVE

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