Multi-tissues - OmicsDI

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Unknown (3406)
Transcriptomics (1641)
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Proteomics (232)
Metabolomics (109)
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Clinical (3)
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Organisms

Mus musculus (724)
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Saccharomyces cerevisiae (4)
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Coturnix japonica (4)
Ferroglobus placidus (3)
Drosophila mojavensis (3)
Haemophilus influenzae R2866 (3)
Mammalia (1)

Organisms

Homo sapiens (383)
Mus musculus (233)
Rattus norvegicus (31)
Brassica napus var. pabularia (12)
Danio rerio (11)
Oryza sativa (8)
Arabidopsis thaliana (7)
Dugesia japonica (5)
Canis lupus familiaris (5)
Sus scrofa (5)
Ovis aries (5)
Drosophila melanogaster (4)
Rohrbachia minima (3)
Pimephales promelas (3)
Bos taurus (3)
Anguilla anguilla (2)
Oreochromis niloticus (2)
Ambystoma mexicanum (2)
Macaca mulatta (2)
Xenopus laevis (2)
Acinetobacter baumannii (2)
Gallus gallus (2)
Solanum lycopersicum x Solanum pimpinellifolium (1)
Ceratopteris richardii (1)
Escherichia coli O157:H7 str. EDL933 (1)
insect frass metagenome (1)
Aralia elata (1)
Lathyrus sativus (1)
Phascolarctos cinereus (1)
Triphyophyllum peltatum (1)

Repository

biostudies-arrayexpress (1330)
ENA (1001)
geo (517)
pride (128)
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iProX (63)
EGA (53)
MassIVE (29)
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PAXDB (9)
GNPS (3)
PanoramaPublic (2)
dbGaP (1)
GPMDB (1)
jPOST (1)

Tissue

Liver (26)
Brain (24)
Cell culture (15)
Heart (14)
Kidney (13)
Lung (13)
Colon (7)
Spleen (6)
Testis (6)
Whole body (6)
Plant cell (5)
Blood serum (4)
Epithelial cell (4)
Root (4)
Skeletal muscle (4)
Blood plasma (3)
Embryo (3)
Leaf (3)
Ovary (3)
Pancreas (3)
Placenta (3)
Prostate gland (3)
White adipose tissue (3)
Adipose tissue (2)
Adrenal gland (2)
Bone (2)
Breast (2)
Endosperm (2)
Gut (2)
Jejunum (2)

Disease

Normal (13)
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Not applicable (1)
Asthma (1)
Ischaemia reperfusion injury (1)
Spinal muscular atrophy (1)
Cutaneous melanoma (1)
Pneumococcal meningitis (1)
No injury (1)
Refractory cytopenia with multilineage dysplasia and ringed sideroblasts (1)
Pancreatic ductal adenocarcinoma (1)
Scrapie infected (1)
Oligodendroglioma (1)
Sham treated (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Fibrosis (1)
Infected (1)
Squamous cell carcinoma (1)
IBDV infected (1)
Normal (1)
Tumor (1)
Pre diabetic (1)
None (1)
Multiple myeloma (1)
Neuroblastoma (1)
Cholangiocarcinoma (1)

Technology Type

Mass Spectrometry (128)
Shotgun proteomics (62)
Mass spectrometry (58)
Mass spectrometry assay (43)
Bottom-up proteomics (29)
Data-independent acquisition (18)
Data-dependent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (8)
SWATH MS (8)
Top-down proteomics (5)
NMR spectroscopy (3)
Mass spectrometry imaging (3)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy assay (2)
All-ion fragmentation (2)
Infinium_OmniExpress-24v1.0 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2500 (40)
Illumina NovaSeq 6000 (32)
Illumina HiSeq 4000 (24)
Illumina HiSeq 2000 (19)
NextSeq 500 (13)
NextSeq 550 (4)
GenePix 4000A [Axon Instruments] (3)
Illumina Genome Analyzer IIx (3)
NextSeq 2000 (3)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
ScanArray 5000 [PerkinElmer] (2)
418 [Affymetrix] (2)
Illumina Genome Analyzer II (2)
Illumina HiSeq 3000 (2)
Hamamatsu Nanozoomer S60 (1)
NanoString nCounter (1)
IPK PhenoSphere (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
Nanodrop 2000c spectrophotometer (1)
Illumina Nextera XT (1)
Quiagen (1)
Sequel II (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
10X Genomics Chromium v3.1 with multiplexing kit (1)
Bio-Rad CFX96 Real-time System (1)
Affymetrix GeneChip Scanner (1)

Publication Date

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2013 (183)
2014 (169)
2025 (163)
2010 (152)
2015 (145)
2012 (136)
2011 (108)
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2016 (100)
2023 (97)
2022 (91)
2021 (90)
2008 (85)
2020 (78)
2009 (59)
2017 (54)
2018 (49)
2007 (41)
2019 (38)
2005 (21)
2006 (10)
2004 (4)
2003 (1)
2027 (1)

UNIPROT ID/AC

14332_ARATH (4)
14333_ARATH (4)
14334_ARATH (4)
14335_ARATH (4)
14336_ARATH (4)
14337_ARATH (4)
14338_ARATH (4)
1433G_MOUSE (4)
1433Z_MOUSE (4)
1A110_ARATH (4)
1A112_ARATH (4)
2A5A_ARATH (4)
2A5B_ARATH (4)
2A5G_ARATH (4)
2A5T_ARATH (4)
2A5Z_ARATH (4)
2AAA_ARATH (4)
2AAB_ARATH (4)
2AAG_ARATH (4)
2AB2A_ARATH (4)
2AB2D_ARATH (4)
2ABA_ARATH (4)
2ABB_ARATH (4)
3HID1_ARATH (4)
3HID2_ARATH (4)
3HIDH_ARATH (4)
4CL1_ARATH (4)
4CL2_ARATH (4)
4CL3_ARATH (4)
4CL4_ARATH (4)

CHEBI ID

CHEBI:20747 (5)
CHEBI:25979 (5)
CHEBI:2385828941 (5)
CHEBI:36799 (5)
CHEBI:80482 (5)
CHEBI:19812 (5)
CHEBI:44616 (5)
CHEBI:15771 (5)
CHEBI:78582 (5)
CHEBI:134195 (5)
CHEBI:3387 (5)
CHEBI:18535 (5)
CHEBI:73722 (5)
CHEBI:80402 (5)
CHEBI:1805230632 (5)
CHEBI:82576 (5)
CHEBI:80658 (5)
CHEBI:82571 (5)
CHEBI:18533 (5)
CHEBI:15419 (5)
CHEBI:133357 (5)
CHEBI:80401 (5)
CHEBI:27434 (5)
CHEBI:15550 (5)
CHEBI:7633 (5)
CHEBI:82563 (5)
CHEBI:82574 (5)
CHEBI:82572 (5)
CHEBI:34512 (5)
CHEBI:76318 (5)

Metabolite Name

Uridine (21)
Taurine (20)
Creatine (20)
Hypoxanthine (20)
Adenosine (19)
Adenine (19)
Inosine (19)
Riboflavin (17)
Guanosine (17)
Creatinine (17)
Thymine (16)
Choline (16)
Betaine (15)
Xanthine (15)
L-Phenylalanine (14)
L-Alanine (13)
Sebacic acid (13)
Histamine (13)
Proline (13)
Phenylalanine (13)
Cytidine (13)
L-Valine (13)
L-Tyrosine (13)
L-Threonine (12)
Allantoin (12)
L-Histidine (12)
Indole (12)
Xanthosine (12)
Guanine (12)
Sarcosine (12)

First Public Date

2026 (230)
2025 (184)
2024 (126)
2023 (102)
2014 (65)
2022 (54)
2021 (48)
2019 (45)
2020 (40)
2017 (38)
2018 (19)
2016 (19)
2015 (19)
2013 (11)
2012 (1)

Modelling Approach

Constraint-based model (8)
Ordinary differential equation model (3)
Delayed differential equation model (1)

Study status

Recruiting (2)
Not provided (1)

Lab affiliation

Tokyo Metropolitan Institute of Medical Science (4)
Biological Chemistry Section, National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, Maryland, United States (3)
Third Military Medical University (3)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (2)
Hebei Key Laboratory of Metabolic Diseases (2)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany (2)
University of Missouri-Columbia (2)
University of Vienna (2)
Affiliated Cancer Hospital of Hainan Medical University (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Animal Sciences Department, Ohio Sate University (1)
Ben-Gurion University (1)
Beth Israel Deaconess Medical Center and Harvard Medical School (1)
Biology department, Washington Univeristy in St. Louis (1)
Biology department, Washington University in Saint Louis, Saint Louis, MO, USA (1)
Center for Interdisciplinary Cardiovascular Sciences, Division of Cardiovascular Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA (1)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester. (1)
Centre for Cardiovascular Biology and Disease Research, La Trobe Institute for Molecular Science and Department of Microbiology, Anatomy, Physiology and Pharmacology, School of Agriculture, Biomedicine and Environment, La Trobe University, Bundoora, VIC, Australia (1)
China Agricultural University (West Campus) College of Animal Science and Technology (1)
Circadian Clock Project, TOkyo Metropolitan Institute of Health Science (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science (1)
College of Animal Science/Key Laboratory of Animal Genetics, Breeding and Reproduction in the Plateau Mountainous Region, Ministry of Education, Guizhou University (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (1)
Cutaneous Oncology and Immunology Moffitt Cancer Center Tampa, FL, USA (1)
David Meierhofer, MS facility, Max Planck Institute for Molecular Genetics, Berlin-Dahlem, Germany ( lab head ) (1)
Departamento de Produção Animal Instituto Superior de Agronomia Tapada da Ajuda 1349-017 Lisboa Portugal (1)
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill,NC 27599,USA (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense M, Denmark (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biology University of Florida (1)

Keyword

Multi-omics method (1)
Biomarker (1)
Fibroblast Activation Protein (1)
Fibroblast Activation Protein Inhibitor (1)
FAPI (1)

IsPrivate

False (16)

Model Flag

Non Kinetic (4)

Submitter Keywords

Not Peer Reviewed (6)
FROG (5)
Manuscript Accepted (1)

Classification

bacteria (4)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (922)
RNA-seq of coding RNA (157)
Methylation profiling by high throughput sequencing (27)
ChIP-seq (23)
RNA-seq of coding RNA from single cells (20)
RNA-seq of non coding RNA (20)
Methylation profiling by array (19)
Unknown experiment type (18)
Comparative genomic hybridization by array (16)
Animal - High-throughput sequencing (12)
Other (11)
Transcription profiling by tiling array (10)
Transcription profiling by RT-PCR (9)
ChIP-chip by tiling array (8)
RNA-seq of total RNA (6)
MicroRNA profiling by array (5)
DNA-seq (5)
Human - One-color microarray (4)
MicroRNA profiling by high throughput sequencing (3)
Spatial transcriptomics by high-throughput sequencing (3)
Bisulfite-seq (3)
Single nucleus RNA sequencing (3)
Animal - One-color microarray (2)
Human - Methylation microarray (2)
Cell line - One-color microarray (2)
Cell line - High-throughput sequencing (2)
ChIP-chip by array (2)
Single-nucleus ATAC-seq (1)
Transcription profiling by SAGE (1)
One-color microarray (1)

Release Date

2025 (660)
2023 (427)
2024 (414)
2022 (414)
2021 (362)
2020 (267)
2014 (234)
2013 (219)
2015 (206)
2019 (196)
2016 (186)
2018 (172)
2010 (166)
2012 (160)
2011 (139)
2017 (137)
2026 (135)
2008 (88)
2009 (68)
2007 (45)
2005 (18)
2006 (14)
2004 (5)
2003 (3)
2002 (1)

Location

China (1)
United States (1)

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Multi-omics RNA profiling of glioblastoma patient tissues

Multi-omics profiling of paired primary and recurrent glioblastoma patient tissues

EGAD00010001895 | EGA

Proteomic profile of human stem cells from dental pulp and periodontal ligament

Dental stem cells isolated from oral tissues have been shown to provide with high proliferation ability and multi-lineage differentiation potential. Although the dental stem cells possess the potential of nerve regeneration, the specific expression profile of dental pulp stem cells (DPSCs) and perio...

ORGANISM(S): Homo sapiens (Human)

2021-06-10 | PXD021997 | Pride