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TranscriptomicsGene expression profiles of EpiSCs under epiblastic and neural plate developmental conditions
Epiblast stem cells (EpiSCs) were placed in the epiblastic cell maintenance condition (EpiSC) or in a neural plate developmental condition (Iwafuchi-Doi et al. Dev Biol 352, 354-366, 2011) for one (NPC1) or two (NPC2) days, and expression profiles of total mRNAs were compared. Duplicate EpiSC cultur...
ORGANISM(S): Mus musculus 
2012-12-07 | E-GEOD-38085 | biostudies-arrayexpress
TranscriptomicsGenomic profiling of gastric adenomas by array-based comparative genomic hybridization
In this study, we investigated CNAs of 20 gastric CIS (Vienna category 4.2) and 20 adenomas, including 7 low-grade adenomas (LGA; Vienna category 3) and 13 high-grade adenomas (HGA; Vienna category 4.1), by 244k oligonucleotide-based array comparative genomic hybridization (array CGH). 20 gastric ad...
ORGANISM(S): Homo sapiens 
2010-06-18 | E-GEOD-19574 | biostudies-arrayexpress
TranscriptomicsGenomic copy number aberrations of 11 gastric cancer cell lines
Genomic copy number aberrations of 11 gastric cancer cell lines were analyzed by 244k CGH array from Agilent Technologies. Based on this results, we separated the 11 cell lines into 2 groups, with and without copy number increase at chromosome 20q13 We performed array comparative genomic hybridizati...
ORGANISM(S): Homo sapiens 
2016-04-01 | E-GEOD-67604 | biostudies-arrayexpress
TranscriptomicsIntratumoral genomic heterogeneity in submucosal-invasive gastric cancer
In this study, we investigated CNAs of 59 tumor samples from 27 patients with submucosal-invasive gastric cancers (SMGC) by 44k oligonucleotide-based array comparative genomic hybridization (array CGH). 23 mucosal portion of SMGC vs 23 paired submucosal (SM) portion of SMGC, 9 SM portion vs 9 paired...
ORGANISM(S): Homo sapiens 
2012-01-20 | E-GEOD-26800 | biostudies-arrayexpress
TranscriptomicsGenomic profiling of gastric carcinoma in situ by array-based comparative genomic hybridization
In this study, we investigated CNAs of 20 gastric CIS (Vienna category 4.2) and 20 adenomas, including 7 low-grade adenomas (LGA; Vienna category 3) and 13 high-grade adenomas (HGA; Vienna category 4.1), by 244k oligonucleotide-based array comparative genomic hybridization (array CGH). 20 gastric ca...
ORGANISM(S): Homo sapiens 
2010-01-31 | E-GEOD-19566 | biostudies-arrayexpress
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