Murray John J - OmicsDI

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Unknown (315)
Genomics (33)
Transcriptomics (4)
Proteomics (4)
Metabolomics (3)
Genomic (1)

Organisms

Caenorhabditis elegans (29)
Homo sapiens (7)
Methanococcus maripaludis S2 (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (33)
EGA (4)
MassIVE (3)
MetaboLights (3)
dbGaP (1)
pride (1)

Tissue

Seminal fluid (1)

Technology Type

Mass spectrometry (3)
Bottom-up proteomics (1)
Mass Spectrometry (1)

Instrument Platform

LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Q Exactive Plus (1)
6520 Q-TOF LC/MS (Agilent) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (30)
2022 (3)
2009 (1)
2008 (1)
2006 (1)
2023 (1)
2016 (1)
2025 (1)

CHEBI ID

CHEBI:1372 (1)
CHEBI:144043 (1)
CHEBI:15344 (1)
CHEBI:15356 (1)
CHEBI:15366 (1)
CHEBI:15428 (1)
CHEBI:15741 (1)
CHEBI:15753 (1)
CHEBI:15756 (1)
CHEBI:15824 (1)
CHEBI:15901 (1)
CHEBI:15908 (1)
CHEBI:15940 (1)
CHEBI:15978 (1)
CHEBI:16000 (1)
CHEBI:16010 (1)
CHEBI:16135 (1)
CHEBI:16168 (1)
CHEBI:16199 (1)
CHEBI:16411 (1)
CHEBI:16449 (1)
CHEBI:16530 (1)
CHEBI:16704 (1)
CHEBI:16709 (1)
CHEBI:16811 (1)
CHEBI:16857 (1)
CHEBI:16958 (1)
CHEBI:16995 (1)
CHEBI:17084 (1)
CHEBI:17113 (1)

Metabolite Name

3-Methyl-2-oxovaleric acid (2)
(-)-Epigallocatechin (1)
(.+/-.)-Lyoniresinol 2a-O-.beta.-D-glucopyranoside (1)
(.alpha.S,1S,2R)-.alpha.-Amino-2-carboxycyclopropaneacetic acid (1)
(1-Acetyloxy-3-hydroxy-6,8a-dimethyl-7-oxo-3-propan-2-yl-2,3a,4,8-tetrahydro-1H-azulen-4-yl) 4-hydroxybenzoate (1)
(1-Hydroxycyclohexyl)acetic acid (1)
(12Z)-9,10,11-Trihydroxyoctadec-12-enoic acid (1)
(17Z)-16-(Acetyloxy)-6-hydroxy-4,8,14-trimethyl-3,7-dioxo-18-norcholesta-17,24-dien-21-oic acid (1)
(2E)-N-(4-Acetamidobutyl)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enamide (1)
(2E,4E)-5-(6-((.beta.-D-Glucopyranosyloxy)methyl)-1-hydroxy-2,6-dimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid (1)
(2E,4E)-7,12-Dihydroxy-13-(hydroxymethyl)-3,5,7-trimethyltetradeca-2,4-dienedioic acid (1)
(2E,6E,10E,14S)-14-((2-O-.beta.-D-Glucopyranosyl-.beta.-D-glucopyranosyl)oxy)-2,6,10,14-tetramethylhexadeca-2,6,10,15-tetraenoic acid (1)
(2R,3R,4S,5S,6R)-2-Octoxy-6-[[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxymethyl]oxane-3,4,5-triol (1)
(2S)-2-[(2R,3S,7R,8R,8aS)-2,3,4'-Trihydroxy-4,4,7,8a-tetramethyl-6'-oxospiro[2,3,4a,5,6,7-hexahydro-1H-naphthalene-8,2'-3,8-dihydrofuro[2,3-e]isoindole]-7'-yl]-3-methylbutanoic acid (1)
(2S)-4-Amino-2-hydroxybutanoic acid (1)
(3-(Hexopyranosyloxy)-2-((2Z)-pent-2-en-1-yl)cyclopentyl)acetic acid (1)
(3.beta.,5.Xi.,8.alpha.,9.beta.,10.alpha.,16.beta.)-16-Hydroxykauran-3-yl .beta.-D-glucopyranoside (1)
(3.beta.,5.Xi.,9.Xi.,18.Xi.)-3,19-Dihydroxyurs-12-ene-24,28-dioic acid (1)
(3S,4S,6aR,6bS,8R,8aR,12aS,14bR)-8-Hydroxy-4,6a,6b,11,11,14b-hexamethyl-3-[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicene-4,8a-dicarboxylic acid (1)
(3S,6R,12S)-6-Benzyl-3-butan-2-yl-9-(6,7-dihydroxyoctyl)-1,4,7,10-tetrazabicyclo[10.4.0]hexadecane-2,5,8,11-tetrone (1)
(4-(.beta.-D-Glucopyranosyloxy)-2,6-bis(3-methylbut-2-en-1-yl)phenyl)(hydroxy)acetic acid (1)
(5-Chloro-1H-benzimidazol-2-yl)methanol (1)
(5.Xi.,9.Xi.,18.Xi.)-3-Oxolup-20(29)-ene-27,28-dioic acid (1)
(7E)-11-Hydroxy-4,5,8,13,13-pentamethyl-3-(2-methylpropyl)-3,3a,4,6a,9,10,11,11a,14a,15-decahydro-1H-[1,3]dioxolo[9,10]oxacyclododecino[2,3-d]isoindole-1,16(2H)-dione (1)
(9Z,12E)-15,16-Dihydroxyoctadeca-9,12-dienoic acid (1)
(E)-1-Hydroxy-2-methylbut-2-enyl 4-diphosphate (1)
(E)-3,10-Dihydroxy-4,9-dimethyldodec-6-enedioic acid (1)
(E)-3-(4-Acetyloxy-2,3-dihydroxy-2,5,5,8a-tetramethyl-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl)prop-2-enoic acid (1)
(E)-4-Hydroxy-4-[4-hydroxy-2-[(E)-6-hydroxyhept-1-enyl]cyclopentyl]but-2-enoic acid (1)
(E)-4-[4-[(E)-Hept-1-enyl]-2,5-dihydroxy-3-(hydroxymethyl)-7-oxabicyclo[4.1.0]hept-3-en-6-yl]-2-methylbut-2-enoic acid (1)

Study type

ChIP-seq (29)
Transcription profiling by array (3)
Transcription profiling by tiling array (1)

Release Date

2011 (41)
2022 (36)
2018 (33)
2023 (28)
2021 (28)
2025 (24)
2024 (23)
2019 (20)
2015 (20)
2017 (19)
2020 (17)
2014 (17)
2016 (14)
2010 (7)
2009 (5)
2013 (5)
2012 (4)
2026 (3)
2008 (2)
2006 (1)
2003 (1)

Lab affiliation

School of Environmental and Life Sciences, College of Engineering, Science and Environment, The University of Newcastle, University Drive, Callaghan, NSW 2308, Australia. Infertility and Reproduction Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW 2305, Australia. (1)

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Brown and beige adipose tissue regulate systemic metabolism through a metabolite interorgan signaling axis

Brown and beige adipose tissue are emerging as distinct endocrine organs. These tissues are functionally associated with skeletal muscle, adipose tissue metabolism and systemic energy expenditure, suggesting an interorgan signaling network. Using metabolomics, we identify 3-methyl-2-oxovaleric acid,...

2022-03-03 | MTBLS2436 | MetaboLights

Sleep Quality in Neuromyelitis Optica Spectrum Disorder: A Systematic Review.

Not available

S-EPMC9135364 | biostudies-literature

Transcription profiling of cultured human cells response to stress (heat shock)

TT3 and TN are cell cycle time courses and should be centered or transformed before clustering or computing fourier scores. The preferred method is SVD centering preceded by KNNImpute missing-value estimation, although mean-centering is a viable alternative. Hela Heat 42 degrees time course has...

ORGANISM(S): Homo sapiens

2006-06-06 | E-SMDB-1577 | biostudies-arrayexpress

Functional studies of E. faecalis RNase J2 and its role in virulence and fitness.

Not available

S-EPMC5383250 | biostudies-literature

Transcription profiling of human sequential breast cancer biopsies during letrozole treatment

In the present investigation, we have exploited the opportunity provided by neoadjuvant treatment of a group of postmenopausal women with large operable or locally advanced breast cancer (in which therapy is given with the primary tumour remaining within the breast) to take sequential biopsies of th...

ORGANISM(S): Homo sapiens

2008-06-13 | E-GEOD-5462 | biostudies-arrayexpress

Structural and Functional Analysis of the Gut Microbiome for Toxicologists.

Not available

S-EPMC6484866 | biostudies-literature

COVID-19 outcomes in UK centre within highest health and wealth band: a prospective cohort study.

Not available

S-EPMC7670555 | biostudies-literature

Identifying lung cancer in Emergency Department patients outside national lung cancer screening guidelines.

Not available

S-EPMC11898393 | biostudies-literature

Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells.