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TranscriptomicsSingle-cell characterization of anti-LAG3+anti-PD1 treatment in melanoma patients
We evaluated blood samples from 6 patients with metastatic melanoma treated with anti-LAG3+anti-PD1 (160+480 mg) in a phase I trial (NCT01968109) using single-cell RNA and T cell receptor (TCR) sequencing (scRNA+TCRαβ-seq, 10X 5') combined with other multiomics profiling (flow, cytokine, TCRb-seq) f...
ORGANISM(S): Homo sapiens 
2023-02-03 | E-MTAB-12733 | biostudies-arrayexpress
TranscriptomicsRajala_et_al_2013
Large lymphocytic leukemia (LGL) is a chronic clonal lymphoproliferative disorder, characterized by expansion of cytotoxic CD8+ T-cells or NK-cells. We compared gene expression of 3 LGL leukemia patients with STAT3 mutation (Patients 1, 2, and 3), 3 LGL leukemia patients with STAT5b mutation (Patien...
ORGANISM(S): Homo sapiens 
2013-04-15 | E-MTAB-1611 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNA sequencing and single-cell CRISPR screens of interacting natural killer and blood cancer cells
To profile the cell states of interacting natural killer (NK) cells and blood cancer cells, we cultured 26 different cell lines representing diverse hematologic neoplasms either alone or with NK cells derived from three healthy human donors. After 24 h co-culture, we labeled the cells from each mono...
ORGANISM(S): Homo sapiens 
2023-07-24 | E-MTAB-13204 | biostudies-arrayexpress
TranscriptomicsSingle-cell RNA sequencing of erythroid and megakaryocytic acute myeloid leukemia patient cells
Single-cell RNA sequencing was performed on bone marrow mononuclear of a patient with acute myeloid leukemia with erythroid differentiation of the blasts and on peripheral blood mononuclear cells of a patient with acute myeloid leukemia with megakaryocytic differentiation of the blasts. Raw data for...
ORGANISM(S): Homo sapiens 
2022-12-05 | E-MTAB-12607 | biostudies-arrayexpress
TranscriptomicsscRNA and TCRalpha-beta-seq data from 3 dissociated renal cell carcinoma samples that were CD45 positive sorted, enriched for lymphocytes and sequenced
In our study, we have characterized the non-expanded and expanded tumor-infiltrating lymphocytes (TILs) from treatment-naive renal cell carcinoma (RCC) patients (n=3), as well as the minimally cultured pre-REP TILs and rapidly expanded REP TILs with a clinical-grade TIL expansion protocol. We observ...
ORGANISM(S): Homo sapiens 
2023-12-29 | E-MTAB-12910 | biostudies-arrayexpress
TranscriptomicsSingle-cell characterization of immune aplastic anemia reveals convergence of adaptive and innate immunity: in vitro
Immune aplastic anemia (AA) is a life-threatening bone marrow (BM) failure disorder driven by an autoimmune T cell attack against the hematopoietic stem and progenitor cells (HSPCs). However, the autoantigen targets and the role of other immune cells are unknown. Here, by combining scRNA+TCRαβ-seq, ...
ORGANISM(S): Homo sapiens 
2024-12-12 | E-MTAB-13484 | biostudies-arrayexpress
TranscriptomicsSomatic Gain-of-Function mTOR mutation in Clonally Expanded T-lymphocytes Associated with Chronic Graft-Versus-Host Disease
Graft-versus-host-disease (GvHD) is the main complication of allogeneic hematopoietic stem cell transplantation (HSCT). Here we report studies of a patient with chronic GVHD (cGVHD) carrying persistent CD4+ T cell clonal expansion which harbored somatic mTOR, NFKB2, and TLR2 mutations. Functional an...
ORGANISM(S): Homo sapiens 
2020-04-12 | E-MTAB-8911 | biostudies-arrayexpress
GenomicsGencode_550K
Lymphoma samples using HumanOmni
EGAD00010000949 | EGA
GenomicsGencode_15K
Lymphoma samples using CytoSNP
EGAD00010000947 | EGA
Genomicsena-DATASET-DKFZ-HIPO-22-04-2016-18:09:52:421-12 - samples
Paired-end RNA sequencing using total RNA from 136 primary lymphoma samples. Sequencing was performed on the Illumina HiSeq2000 with 300bp insert size. The dataset contains FASTQ files.
EGAD00001002056 | EGA
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