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TranscriptomicsRNA-seq of Arabidopsis thaliana wild-type and a putative chloroplast ribosome biogenesis mutant AtRsgA homozygous knockout
In this study, we have characterized a putative chloroplast ribosome assembly factor. To elucidate transcriptional responses caused by decreased chloroplast function, we have measured the transcriptome of wild-type and knock-down seedlings.
ORGANISM(S): Arabidopsis thaliana 
2018-08-16 | E-MTAB-6866 | biostudies-arrayexpress
TranscriptomicsMulti-omic dissection of heat stress memory responses in Brachypodium distachyon - DNA methylation data
Stressful environmental conditions, including heat stress (HS), are a major limiting factor in crop yield. Understanding the molecular mechanisms of plant stress memory and resilience is important for improving crop yield. We performed a temporal atlas of DNA methylation to reveal the biological pat...
ORGANISM(S): Brachypodium distachyon 
2023-03-17 | E-MTAB-12727 | biostudies-arrayexpress
TranscriptomicsRNA-seq of diurnal gene expression of Cyanophora paradoxa, Porphyridium purpureum, Klebsormidium nitens, Physcomitrella patens, Selaginella moellendorfii and Picea abies
We compared the diurnal gene expression across nine clades of Archaeplastida. The organisms were subjected to either 12 hours light / 12 hours darkness (12L/12D) or 16L/8D. The samples were taken every two hours in triplicates.
ORGANISM(S): Porphyridium purpureum 
2019-01-16 | E-MTAB-7188 | biostudies-arrayexpress
TranscriptomicsSelaginella expression atlas
We created a gene expression atlas of major organs and under environmental perturbations (temperature and light) of the lycophyte Selaginella moellendorffii
ORGANISM(S): Selaginella moellendorffii 
2020-01-21 | E-MTAB-8217 | biostudies-arrayexpress
TranscriptomicsComparative analysis of abiotic stress responses in the basal algae Cyanophora paradoxa
We generated a comprehensive RNAseq expression atlas for several stress conditions in order to analyze changes in the gene expression during adaptation to mild stresses. The stresses are divided into two main groups: the “nutrient stresses” and the “environmental stresses”. Nutrient stresses include...
ORGANISM(S): Cyanophora paradoxa 
2020-01-21 | E-MTAB-7822 | biostudies-arrayexpress
TranscriptomicsMulti-omic dissection of heat stress memory responses in Brachypodium distachyon - sRNA-seq data
Stressful environmental conditions, including heat stress (HS), are a major limiting factor in crop yield. Understanding the molecular mechanisms of plant stress memory and resilience is important for improving crop yield. We performed a sRNA-seq to reveal the biological pathways and potential funct...
ORGANISM(S): Brachypodium distachyon 
2023-03-17 | E-MTAB-12739 | biostudies-arrayexpress
TranscriptomicsTissue and developmental atlas of Brachypodium distachyon
Due to its small and sequenced genome, short generation time, efficient transformation and increasing genetic resources, Brachypodium distachyon is an emerging model for grasses. Despite this, data capturing gene expression patterns across different organs and developmental stages is missing. We hav...
ORGANISM(S): Brachypodium distachyon 
2017-06-03 | E-MTAB-5491 | biostudies-arrayexpress
TranscriptomicsMulti-omic dissection of heat stress memory responses in Brachypodium distachyon - RNA-seq data
Stressful environmental conditions, including heat stress (HS), are a major limiting factor in crop yield. Understanding the molecular mechanisms of plant stress memory and resilience is important for improving crop yield. We performed a dense temporal atlas of gene expression to reveal the biologic...
ORGANISM(S): Brachypodium distachyon 
2023-03-23 | E-MTAB-12755 | biostudies-arrayexpress
TranscriptomicsMarchantia abiotic stress combination and diurnal gene expression atlas
In this study, we set to take advantage of Marchantias less complex signalling architecture to better understand how plants respond to environmental cues such as stress and time of the day, to modulate the expression of genes and biological pathways. To this end, we constructed an abiotic stress gen...
ORGANISM(S): Marchantia polymorpha subsp. polymorpha 
2021-11-17 | E-MTAB-11141 | biostudies-arrayexpress
TranscriptomicsEVOREPRO: RNA-seq of Marchantia polymorpha Takaragaike sperm cells
Marchantia sperm RNA-seq data
ORGANISM(S): Marchantia polymorpha subsp. polymorpha 
2021-04-14 | E-MTAB-9457 | biostudies-arrayexpress
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