Mycobacteria - OmicsDI

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Mycobacterium tuberculosis (72)
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Mycolicibacterium smegmatis MC2 155 (13)
Corynebacterium glutamicum ATCC 13032 (9)
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Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (4)
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Mycobacteroides abscessus ATCC 19977 (2)
Canis lupus familiaris (2)
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Organisms

Homo sapiens (41)
Mycobacterium tuberculosis (25)
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Mycolicibacterium smegmatis (16)
Danio rerio (15)
Mycobacterium (14)
Mycobacteroides abscessus (12)
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Mycobacterium marinum (6)
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Mycolicibacterium smegmatis MC2 155 (6)
Mycobacteroides chelonae (5)
Corynebacterium glutamicum ATCC 13032 (4)
Mycobacterium tuberculosis variant bovis (4)
Bos taurus (4)
human lung metagenome (3)
Macaca mulatta (3)
soil metagenome (3)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (2)
Mycobacteroides abscessus MAB_082312_2273 (2)
Mycolicibacterium llatzerense (2)
Mycolicibacterium smegmatis MKD8 (2)
Mycobacterium haemophilum DSM 44634 (2)
Mycobacterium tuberculosis variant africanum (2)
Mycobacterium avium (2)
Mycobacteroides abscessus ATCC 19977 (2)
Mycobacteriales (2)
Mycobacterium avium subsp. hominissuis (2)
Mycobacterium tuberculosis variant bovis BCG (2)

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Disease

Tuberculosis (15)
Pulmonary tuberculosis (8)
Disease free (2)
Fish tuberculosis (1)
Cystic fibrosis (1)
Bovine tuberculosis (1)
Primary tuberculosis (1)
Urinary tract infection (1)
Cystic fibrosis (1)

Technology Type

Mass Spectrometry (104)
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Gel-based experiment (6)
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Mass spectrometry assay (3)
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ESI (1)
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SWATH MS (1)
Top-down proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

NextSeq 550 (7)
Q Exactive (6)
Illumina HiSeq 2000 (4)
NextSeq 500 (4)
Illumina NovaSeq 6000 (3)
Nanodrop N1000 spectrophotometer (2)
Illumina HiSeq 2500 (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Q Exactive HF-X (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - hilic (2)
Illumina Hiseq 2000 (1)
NanoDrop (1)
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Ion Torrent PGM (1)
R (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Q Exactive Plus (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
LTQ Orbitrap (1)
Q Exactive HF (1)
PEGASUS HT GC-MS (LECO) (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2024 (46)
2010 (43)
2026 (34)
2025 (34)
2015 (31)
2018 (30)
2019 (29)
2023 (26)
2022 (26)
2014 (20)
2013 (19)
2020 (17)
2016 (16)
2009 (15)
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2011 (12)
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2017 (10)
2008 (8)
2007 (8)
2005 (4)
2006 (3)

UNIPROT ID/AC

I6X8D2 (1)
P9WPB3 (1)
Q79FX8 (1)
P0CH91 (1)
Q79FX6 (1)
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P9WQD9 (1)
P9WQD7 (1)
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O53580 (1)
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CHEBI ID

CHEBI:15741 (6)
CHEBI:15351 (5)
CHEBI:15346 (5)
CHEBI:16891 (4)
CHEBI:30915 (4)
CHEBI:30887 (4)
CHEBI:18012 (4)
CHEBI:6650 (4)
CHEBI:30744 (4)
CHEBI:30769 (4)
CHEBI:15380 (4)
CHEBI:16265 (2)
CHEBI:22036 (1)
CHEBI:12742 (1)
CHEBI:33442 (1)
CHEBI:45607 (1)
CHEBI:12757 (1)
CHEBI:12760 (1)
CHEBI:13394 (1)
CHEBI:10833 (1)
CHEBI:57540 (1)
CHEBI:13393 (1)
CHEBI:10786 (1)
CHEBI:527887 (1)
CHEBI:21901 (1)
CHEBI:44214 (1)
CHEBI:44215 (1)
CHEBI:7422 (1)
CHEBI:44281 (1)
CHEBI:29867 (1)

Metabolite Name

Benzoin (2)
Mycothiol (1)
Ergothioneine(1+) (1)
Methylisocitrate (1)
So(d18:1) (1)
SM(d44:2) (1)
SM(d42:1) (1)
SM(42:0) (1)
PS(P-38:5) (1)
PMeOH(34:1) (1)
PE(34:1) (1)
DMPE(32:0) (1)
CL(36:3)_(36:3) (1)
CL(34:2)_(34:2) (1)
CL(32:2)_(34:2) (1)
HexCer(d42:1) (1)
HexCer(d34:1) (1)
PC(P-42:2) (1)
PC(P-32:2) (1)
PC(P-30:0) (1)
PC(O-40:2) (1)
PC(O-40:1) (1)
PC(O-38:2) (1)
TG(O-56:3) (1)
TG(O-56:1) (1)
TG(O-54:3) (1)
TG(O-54:2) (1)
TG(O-50:2) (1)
TG(O-50:0) (1)
TG(O-48:1) (1)

First Public Date

2024 (84)
2026 (80)
2025 (65)
2013 (61)
2023 (48)
2014 (46)
2022 (45)
2021 (34)
2020 (34)
2019 (34)
2018 (28)
2017 (24)
2015 (21)
2016 (19)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (4)

Lab affiliation

Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (6)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (4)
Center for Systems Biology and Molecular Medicine Yenepoya Research Centre Yenepoya (Deemed to be University) University Road, Deralakatte Mangalore 575018, India (2)
Colorado State University (2)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (2)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (2)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (2)
Staff Scientist VII Signal Transduction Lab-1, National Institute of Immunology, Aruna Asaf Ali Marg New Delhi-110067 (1)
Director, Research Integrity and Compliance Review Office (http://ricro.colostate.edu/) Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology (http://www.cvmbs.colostate.edu/DirectorySearch/Search/MemberProfile/CVMBS/3607) Colorado State University Ft. Collins, CO 80523, USA (1)
Molecular Proteomics Laboratory Institute for Molecular Medicine Heinrich-Heine-Universität Düsseldorf 40225 Düsseldorf Germany (1)
University of Oslo Faculty of Medicine Department of Microbiology (1)
IOCB CAS CR (1)
National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China (1)
Integrative biomedical sciences, Health Sciences Campus, University of Cape Town, South Africa (1)
Department of Biological Sciences Department of Chemistry & Biochemistry University of Delaware Newark DE, 19716 (1)
Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology (http://www.cvmbs.colostate.edu/DirectorySearch/Search/MemberProfile/CVMBS/3607) Associate Director, Research Integrity and Compliance Review Office (http://ricro.colostate.edu/) Colorado State University (1)
Leicester Tuberculosis Research Group Department of Infection, Immunity and Inflammation University of Leicester Leicester LE1 9HN United Kingdom (1)
Institute of Organic Chemistry and Biochemistry CAS (1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India (1)
Lipolysis and Bacterial Pathogenicity team, LISM UMR7255, CNRS, Aix-Marseille Univ. , IMM FR3479, Marseille, France (1)
Department of Integrative Biomedical Sciences, University of Cape Town, Cape Town, South Africa, 7925 (1)
Immunobiology of Infection Unit,Institut Pasteur, 75015 Paris, France (1)
Analyitical Biochemistry and Proteomics Unit Instituto de Investigaciones Biologicas Clemente Estable/ Institut Pasteur de Montevideo (1)
Analytical Biochemistry and Proteomics Unit. Institut Pasteur de Montevideo and Instituto de Investigaciones Biológicas Clemente Estable (1)
State Key Laboratory of Respiratory Disease, Institute of Drug Discovery, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences (1)
Shanghai Pulmonary Hospital 1Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China (1)
Singapore Professor of Biological Engineering Professor of Biological Engineering Massachusetts Institute of Technology Department of Biological Engineering, 56-731 77 Massachusetts Ave. Cambridge, MA 02139 (1)
Department of Microbiology, Immunology, and Pathology, Mycobacteria Research Laboratories, Colorado State University, Colorado, USA (1)
Scientific Research Center, Shanghai Public Health Clinical Center, Fudan University, Jinshan District, Shanghai, China (1)
Director, Research Integrity and Compliance Review Office Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology Colorado State University Ft. Collins, CO (1)

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Submitter Keywords

Manuscript Accepted (1)
FROG (1)

Classification

bacteria (136)
viruses (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (109)
RNA-seq of coding RNA (22)
RIP-seq (4)
ChIP-seq (4)
Unknown experiment type (2)
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Release Date

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Lsr2, a novel cyclic di-GMP receptor, regulate the synthesis of keto-mycolic acid and control biofilm formation in mycobacteria

Cyclic di-GMP (c-di-GMP) is a well-known second messenger that plays a key role in many physiological processes in bacteria. The synthesis of lipids is essential for bacterial biofilm formation. However, whether c-di-GMP signaling modulates the synthesis of lipid and further regulates biofilm for...

2023-12-12 | MTBLS7053 | MetaboLights

Microbial ecology of nontuberculous mycobacteria (NTM) in cystic fibrosis (CF) sputum

Not available

ORGANISM(S): Homo sapiens

ST000711 | MetabolomicsWorkbench

Arginine utilization following mycobacteria infection in macrophages is dependent on autocrine-paracrine signaling

Nitric oxide (NO) produced by macrophages (MØs) is toxic to both host tissues and invading pathogens and its regulation is therefore essential to suppress host cytotoxicity. MØ arginase 1 (Arg1) inhibits NO production by competing with NO synthases for arginine, the common substrate of NO synthases ...

ORGANISM(S): Mus musculus

2010-07-14 | E-GEOD-22935 | biostudies-arrayexpress

Mycobacteria

PRJNA910563 | ENA

Nontuberculous mycobacteria

Nontuberculous mycobacteria Metagenome

PRJNA779755 | ENA

Mycobacteria species

Mycobacteria species Raw sequence reads

PRJNA401515 | ENA

Nontubercular Mycobacteria

Genomes of previously unsequenced Nontubercular Mycobacteria genome sequencing

PRJNA299467 | ENA

Human Natural Killer Cell activation by mycobacteria

Purified NK cells were co-cultured with M. bovis BCG or M. tuberculosis H37Rv (1:1) in the presence of IL-2 (100U/ml) or IL-12 (10pg/ml) for 24h before trizol extraction. We used microarrays to detail the global gene expression underlying NK cell activation by mycobacteria. NK cell were isolated fro...

ORGANISM(S): Homo sapiens

2011-07-26 | E-GEOD-30950 | biostudies-arrayexpress

mycobacteria

Temperature and pH growth preferences of nontuberculous mycobacteria - Genomic sequencing, Raw sequence reads

PRJNA1163726 | ENA

Non-tuberculous Mycobacteria

Non-tuberculous Mycobacteria sequencing

PRJNA1445202 | ENA

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