N2 - OmicsDI

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Unknown (6653)
Transcriptomics (2399)
Genomics (1847)
Proteomics (538)
Metabolomics (408)
Other (23)
Models (7)
Clinical (3)
Methylation profiling (2)
Genomic (1)
Multiomics (1)

Organisms

Caenorhabditis elegans (782)
Homo sapiens (511)
Mus musculus (454)
Drosophila melanogaster (134)
Arabidopsis thaliana (104)
Saccharomyces cerevisiae (74)
Rattus norvegicus (56)
Candida albicans (31)
Medicago truncatula (18)
Bos taurus (17)
Campylobacter jejuni (17)
Sinorhizobium meliloti (16)
Plasmodium falciparum (15)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (14)
Daphnia magna (12)
Zea mays (11)
Escherichia coli str. K-12 substr. MG1655 (11)
Escherichia coli (11)
Folsomia candida (10)
Solanum lycopersicum (10)
Macaca mulatta (10)
Porphyromonas gingivalis (9)
Schizosaccharomyces pombe (9)
Ferroglobus placidus DSM 10642 (8)
Rhizobium leguminosarum (8)
Gallus gallus (8)
Oryza sativa (7)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)

Organisms

Caenorhabditis elegans (638)
Homo sapiens (107)
Mus musculus (97)
soil metagenome (35)
root metagenome (19)
Arabidopsis thaliana (19)
Saccharomyces cerevisiae (11)
Cereibacter sphaeroides 2.4.1 (10)
Rattus norvegicus (10)
marine metagenome (8)
Oryza sativa (7)
rhizosphere metagenome (7)
Methanosarcina acetivorans C2A (6)
Medicago truncatula (5)
Campylobacter jejuni (4)
Zea mays (4)
Candidatus Atelocyanobacterium thalassae (3)
Salicornia virginica (3)
Cereibacter sphaeroides (3)
Scophthalmus maximus (3)
moss metagenome (3)
Solanum lycopersicum (3)
Bos taurus (3)
mouse gut metagenome (3)
Rubrivivax gelatinosus CBS (2)
Hungatella hathewayi (2)
Azoarcus olearius (2)
oil production facility metagenome (2)
Bradyrhizobium (2)
Caenorhabditis (2)

Repository

biostudies-arrayexpress (2416)
ENA (1485)
pride (482)
geo (352)
MetaboLights (235)
MetabolomicsWorkbench (158)
MassIVE (45)
EGA (16)
GNPS (13)
BioModels (7)
iProX (6)
ExpressionAtlas (3)
NODE (3)
GPMDB (2)
jPOST (2)
dbGaP (1)
LINCS (1)

Tissue

Blood (53)
Cultured cells (20)
Liver (15)
Feces (13)
Plant (6)
Macrophages (6)
Urine (6)
Kidney (5)
Cerebrospinal fluid (5)
Heart (4)
Lung (4)
Worms (4)
Cells (3)
Tail (2)
Intestine (2)
Cecum (2)
Muscle (2)
Hep G2 cells (2)
Culture media (1)
Sarcoma (1)
IPSC cells (1)
Hepatopancreas (1)
Ovarian cancer cells (1)
Date palm fruit (1)
Plasmodium cells (1)
Larvae (1)
Synthetic (1)
Fibroblast cells (1)
Bone marrow (1)
Uterus (1)

Disease

Normal (5)
Glioblastoma multiforme (3)
Malaria (3)
Reference (2)
Pancreatic cancer (2)
Glioblastoma (2)
Lung cancer (1)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Benign tumor (1)
Aviremic HIV (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Not applicable (1)
Phyllodes tumor (1)
Post-stasis (1)
No lesions (1)
Challenged with Pieris rapae larvae (1)
Human osteosarcoma cell line (1)
Control exposed to non-pathogenic DSM-350 (1)
Mild asthma (1)
Infiltrating ductal carcinoma (1)
TSWV infected (1)
Infected with Drechmeria coniospora (1)
Primary tumor (1)
Sham treated (1)
Giant Cell Glioblastoma (1)
E. coli infected control (1)
B. pseudomallei infected (1)
Y. pestis infected (1)
Prostate carcinoma (1)
Healthy donor tissue (1)

Technology Type

Mass Spectrometry (638)
Shotgun proteomics (278)
Mass spectrometry (178)
ESI (149)
Bottom-up proteomics (73)
Affinity purification coupled with mass spectrometry proteomics (64)
Mass spectrometry assay (47)
Gel-based experiment (45)
Data-dependent acquisition (38)
SWATH MS (22)
Data-independent acquisition (22)
Top-down proteomics (13)
EI (12)
NMR spectroscopy (11)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
MSE (8)
SRM/MRM (8)
HDMSE (5)
Mass spectrometry imaging (4)
All-ion fragmentation (3)
Unspecified (2)
NMR (2)
DiaPASEF (2)
Illumina HiSeq 2500, ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
KINOMEscan (1)
Fluorescence intensity (1)
APCI (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2500 (63)
Illumina NovaSeq 6000 (58)
NextSeq 500 (49)
Illumina HiSeq 2000 (32)
Illumina HiSeq 4000 (24)
Illumina Genome Analyzer IIx (10)
Illumina NovaSeq X (7)
Illumina MiSeq (7)
Illumina HiSeq 1500 (7)
ScanArray 4000 [PerkinElmer] (6)
NextSeq 2000 (6)
Illumina HiSeq 3000 (6)
ScanArray scanning hardware (5)
ScanArray 4000XL [PerkinElmer] (5)
GenePix 4000B [Axon Instruments] (5)
Axon GenePix 4000B scanning hardware (5)
Ion Torrent Proton (5)
Agilent High resolution C scanner (4)
Maxwell 16 Instrument (4)
Illumina Genome Analyzer II (4)
G2505A DNA microarray scanner [Agilent] (3)
Scanning hardware (3)
NextSeq 550 (3)
Agilent high resolution C scanner (2)
High resolution C. scanner (2)
Complete Genomics (2)
Anaerobic workstation with airlock (2)
ScanArray Lite [PerkinElmer] (2)
Variable Atmosphere Incubator (2)
NextSeq 1000 (2)

Publication Date

2013 (420)
2010 (354)
2012 (259)
2011 (242)
2014 (230)
2015 (199)
2016 (187)
2021 (160)
2025 (150)
2023 (148)
2022 (147)
2024 (133)
2026 (128)
2018 (127)
2008 (120)
2020 (119)
2019 (118)
2009 (106)
2017 (81)
2007 (54)
2006 (27)
2005 (25)
2004 (22)
2003 (2)

CHEBI ID

CHEBI:17154 (27)
CHEBI:15429 (5)
CHEBI:18276 (5)
CHEBI:50606 (5)
CHEBI:15033 (5)
CHEBI:12962 (5)
CHEBI:10986 (5)
CHEBI:128769 (5)
CHEBI:57472 (5)
CHEBI:1178 (5)
CHEBI:16892 (5)
CHEBI:17836 (5)
CHEBI:16651 (5)
CHEBI:18110 (5)
CHEBI:35121 (5)
CHEBI:15934 (5)
CHEBI:15589 (5)
CHEBI:29105 (5)
CHEBI:11851 (5)
CHEBI:18421 (5)
CHEBI:18191 (5)
CHEBI:17158 (5)
CHEBI:17245 (5)
CHEBI:29033 (5)
CHEBI:15811 (5)
CHEBI:29103 (5)
CHEBI:18372 (5)
CHEBI:17001 (5)
CHEBI:37737 (5)
CHEBI:16132 (5)

Metabolite Name

Hypoxanthine (23)
Adenine (22)
Choline (21)
Succinic acid (18)
Uracil (18)
Serine (17)
Phenylalanine (17)
Isoleucine (17)
Adenosine (17)
Glycine (17)
Creatinine (17)
Taurine (17)
L-Phenylalanine (17)
Betaine (16)
Lysine (16)
Alanine (16)
Cytidine (16)
Guanosine (16)
Uridine (16)
Methionine (15)
Oleic acid (15)
Glucose (15)
Valine (14)
Pantothenic acid (14)
Fumaric acid (14)
Stearic acid (14)
Tyrosine (14)
Proline (14)
Palmitic acid (14)
Ornithine (14)

First Public Date

2014 (221)
2024 (174)
2025 (140)
2026 (126)
2023 (125)
2017 (104)
2020 (94)
2022 (92)
2021 (92)
2019 (81)
2018 (73)
2016 (58)
2013 (53)
2015 (48)
2012 (4)

Modelling Approach

Constraint-based model (6)
Ordinary differential equation model (1)

Study status

Recruiting (3)

Lab affiliation

Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany (8)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (6)
Department of Biological Sciences, University of Alberta (6)
Cellzome (5)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, Halle (Saale), Germany (4)
Yale Cancer Biology Institute (4)
Wageningen University (4)
Cornell University Department of Microbiology (3)
Institute for Genetics and CECAD Research Center, University of Cologne, Cologne, Germany (3)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (3)
North Carolina State University (3)
Laboratory of Pediatrics, UMCG, The Netherlands (2)
head of Laboratory of Regenerative Biomedicine, Institute of Cytology, Russian Academy of Sciences (2)
Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (2)
Molecular Biotechnology & Systems Biology, TU Kaiserslautern, Kaiserslautern, Germany (2)
Laboratoire de Spectrometrie de Masse Proteomique Institut Curie PSL Research University (2)
Laboratory of Molecular, Translational and Digital Medicine, Research Institute for Complex Issues of Cardiovascular Diseases, Kemerovo, Russia (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
Instituto de Biotecnología y Biología Molecular Facultad de Ciencias Exactas. Universidad Nacional de La Plata. CCT La Plata CONICET Calle 49 y 115 1900. La Plata Argentina (2)
University of Washington Department of Genome Sciences (2)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (2)
Radboud Proteomics Center, Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc (2)
Lab Head (2)
Division of Biochemistry, Department of Biology, Friedrich-Alexander University Erlangen-Nuremberg, Staudtstr 5, D-91058 Erlangen, Germany (2)
Institute for Systems Biology (2)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. (2)
Biological Mass Spectrometry Lab Department of Translational Medicine (DiMeT) Center for Translational Research on Autoimmune & Allergic Diseases - CAAD University of Piemonte Orientale Novara, Italy (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Institute of Biochemistry and Molecular Biology, Albert-Ludwigs-University of Freiburg (1)
University of FLorida (1)

Tags

pathogen (24)
pathogen:bacterium (20)
xref:PubMed:39625876 (5)
xref:PubMed:39565191 (4)
xref:PubMed:14762175 (4)
xref:PubMed:27688402 (3)
xref:PubMed:29114017 (3)
xref:PubMed:39223373 (3)
xref:PubMed:24489787 (3)
xref:PubMed:42031737 (3)
xref:PubMed:34737442 (3)
xref:PubMed:40997170 (3)
xref:PubMed:38238586 (3)
xref:PubMed:26779286 (3)
xref:PubMed:40540580 (3)
xref:PubMed:35102319 (3)
xref:PubMed:23103171 (3)
xref:PubMed:36231108 (3)
xref:PubMed:28725720 (2)
xref:PubMed:40067309 (2)
xref:PubMed:35081338 (2)
xref:PubMed:37443041 (2)
xref:PubMed:37167403 (2)
xref:PubMed:40702544 (2)
xref:PubMed:35141505 (2)
xref:PubMed:22628496 (2)
xref:PubMed:31346165 (2)
xref:PubMed:34038721 (2)
xref:PubMed:32499657 (2)
xref:PubMed:31619788 (2)

Keyword

Adjuvant chemotherpay (1)
FOLFOXIRI (1)
Irinotecan (1)
Leucovorin (1)
Fluorouracil (1)
Oxaliplatin (1)
Levoleucovorin (1)

IsPrivate

False (7)

Submitter Keywords

FROG (3)

Classification

bacteria (20)
helminths (1)
fungi (1)
protozoa (1)
viruses (1)

Modification

4x(15)N labeled L-arginine (3)
4x(2)H labeled dimethylated residue (2)
2x(15)N labeled L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
Not available (1)

Study type

Transcription profiling by array (1146)
RNA-seq of coding RNA (377)
ChIP-seq (278)
ChIP-chip by tiling array (215)
RNA-seq of non coding RNA (55)
Transcription profiling by tiling array (53)
Other (45)
Unknown experiment type (32)
Comparative genomic hybridization by array (30)
Methylation profiling by array (27)
RNA-seq of coding RNA from single cells (24)
RNA-seq of total RNA (12)
ChIP-chip by array (11)
DNA-seq (11)
Methylation profiling by high throughput sequencing (9)
Genotyping by array (8)
Cell line - High-throughput sequencing (7)
High-throughput sequencing (6)
MicroRNA profiling by array (6)
Proteomic profiling by array (6)
MicroRNA profiling by high throughput sequencing (5)
ATAC-seq (5)
Animal - Two-color microarray (4)
Transcription profiling by RT-PCR (4)
Hi-C (4)
Plant - High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Transcription profiling by SAGE (2)
Baseline (2)
One-color microarray (2)

Release Date

2022 (901)
2021 (811)
2023 (794)
2025 (737)
2020 (662)
2024 (619)
2013 (526)
2019 (487)
2018 (443)
2016 (410)
2014 (388)
2010 (386)
2015 (376)
2017 (349)
2012 (293)
2011 (272)
2008 (144)
2009 (143)
2026 (101)
2007 (72)
2006 (55)
2005 (34)
2004 (27)
2002 (14)
2003 (9)
1998 (6)
2001 (4)
1999 (4)
2000 (1)
1994 (1)

Location

New Zealand (1)
Australia (1)
China (1)
Italy (1)

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Nonomuraea sp. N2-4H

Nonomuraea sp. N2-4H Genome sequencing

PRJNA1085042 | ENA

Pseudomonas sp. N2-C3

Pseudomonas sp. N2-C3_1 transposon mutagenesis other

PRJNA501670 | ENA

Citrobacter freundii strain:N2

Citrobacter freundii strain:N2 Genome sequencing

PRJNA1306526 | ENA

Caenorhabditis elegans strain:N2

Caenorhabditis elegans strain:N2 Genome sequencing

PRJNA321861 | ENA

Prosthecochloris ethylica strain:N2

Prosthecochloris ethylica strain:N2 Genome sequencing and assembly

PRJNA670684 | ENA

Serratia marcescens strain:N2

Serratia marcescens strain:N2 Genome sequencing and assembly

PRJNA525074 | ENA

Bacillus methanolicus strain:N2

Genome sequencing of Bacillus methanolicus strain N2

PRJNA428484 | ENA

Identification and characterizations of DNA N2-alkylguanine-binding proteins

DNA alkylation at the N2 position of guanine (N2-dG) is a prevalent type of DNA minor-groove lesions arising from various exogenous environmental contaminants and endogenous cellular processes. These N2-alkyl-dG lesions can induce G → T mutations during transcription if left unrepaired. However, the...

ORGANISM(S): Homo sapiens (Human)

2024-08-02 | PXD051678 | Pride

Proteomics n2-alkyl-dg hmgb3 sub1

Caenorhabditis elegans strain:N2

Caenorhabditis elegans strain:N2 Raw sequence reads

PRJNA483380 | ENA

Caenorhabditis elegans strain:N2

Caenorhabditis elegans strain:N2 Raw sequence reads

PRJNA1127850 | ENA

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