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Unknown
(51491)
Transcriptomics
(5939)
Genomics
(1719)
Proteomics
(1514)
Metabolomics
(601)
Models
(72)
Other
(32)
Clinical
(24)
Genomic
(18)
Multiomics
(5)
Methylation profiling
(3)
Organisms
Homo sapiens
(2287)
Mus musculus
(1392)
Arabidopsis thaliana
(286)
Drosophila melanogaster
(263)
Rattus norvegicus
(235)
Saccharomyces cerevisiae
(216)
Caenorhabditis elegans
(76)
Escherichia coli
(71)
Danio rerio
(64)
Sus scrofa
(59)
Candida albicans
(43)
Mycobacterium tuberculosis
(41)
Schizosaccharomyces pombe
(40)
Oryza sativa
(37)
Gallus gallus
(34)
Zea mays
(32)
Triticum aestivum
(29)
Rhizobium leguminosarum
(28)
Bos taurus
(26)
Sinorhizobium meliloti
(22)
Pseudomonas putida
(22)
Escherichia coli str. K-12 substr. MG1655
(20)
Canis lupus familiaris
(20)
Apis mellifera
(20)
Oryctolagus cuniculus
(9)
Rattus
(5)
Mammalia
(5)
Cavia porcellus
(2)
Lactococcus cremoris subsp. cremoris MG1363
(1)
Chordata
(1)
Organisms
Homo sapiens
(170)
Mus musculus
(159)
sludge metagenome
(21)
Rattus norvegicus
(18)
Arabidopsis thaliana
(13)
Escherichia coli
(10)
Saccharomyces cerevisiae
(9)
Influenza A virus
(9)
Oryza sativa
(8)
Apostichopus japonicus
(7)
Danio rerio
(7)
sediment metagenome
(6)
Saccharum hybrid cultivar
(5)
Lactiplantibacillus plantarum
(5)
Bos taurus
(5)
Acinetobacter pittii
(4)
Solanum lycopersicum
(4)
Theropithecus gelada
(3)
Thunnus thynnus
(3)
Microcebus murinus
(3)
Rhodococcus rhodochrous
(3)
Ovis aries
(3)
soil metagenome
(3)
bioreactor metagenome
(3)
Micromonas pusilla CCMP1545
(2)
Paspalum vaginatum
(2)
Wuchereria bancrofti
(2)
Limonium bicolor
(2)
Photobacterium damselae subsp. damselae
(2)
Onchocerca volvulus
(2)
Repository
biostudies-arrayexpress
(6272)
ENA
(1039)
pride
(1030)
geo
(314)
MassIVE
(264)
MetaboLights
(255)
MetabolomicsWorkbench
(186)
GNPS
(155)
iProX
(114)
EGA
(101)
BioModels
(55)
PAXDB
(32)
jPOST
(29)
PeptideAtlas
(22)
dbGaP
(18)
PMR
(17)
GPMDB
(11)
PanoramaPublic
(9)
NODE
(8)
EVA
(1)
LINCS
(1)
Tissue
Blood
(74)
Cultured cells
(13)
Unspecified
(9)
Feces
(8)
Adipose tissue
(7)
Liver
(7)
Lung
(5)
Muscle
(4)
Urine
(4)
Colon
(3)
B-cells
(3)
Suspended Marine Particulate Matter
(3)
Brain
(3)
Amniotic fluid
(2)
Cyst fluid
(2)
Water
(2)
Cells
(2)
Bronchoalveolar lavage
(2)
Intestine
(2)
Stem cells
(2)
Cecum
(2)
Plant
(2)
Eye tissue
(2)
Whole Tissue
(1)
Whole animals
(1)
Marine particulate matter
(1)
Scalp
(1)
Vitreous
(1)
Diatom cells
(1)
Sputum
(1)
Disease
Normal
(73)
Breast cancer
(21)
Colon cancer
(18)
Colorectal cancer
(11)
Acute myeloid leukemia
(9)
Prostate cancer
(9)
Alzheimer's disease
(6)
Neuroblastoma
(6)
Glioblastoma
(5)
Adenocarcinoma
(4)
Carcinoma
(4)
Head and neck squamous cell carcinoma
(4)
Chronic lymphocytic leukemia
(3)
Cancer
(3)
NA
(3)
Hypertension
(3)
ACUTE MYELOID LEUKEMIA
(2)
Rett syndrome
(2)
HHV-6B infected
(2)
Healthy
(2)
Breast adenocarcinoma
(2)
Porphyria NOS
(2)
Squamous cell carcinoma
(2)
Colon adenocarcinoma
(2)
Papillary thyroid carcinoma
(2)
Reference
(2)
Acute promyelocytic leukemia
(2)
Brugada syndrome
(1)
Amyotrophic lateral sclerosis
(1)
Heart disease
(1)
Technology Type
Mass Spectrometry
(1213)
Shotgun proteomics
(535)
Mass spectrometry
(193)
Bottom-up proteomics
(178)
ESI
(171)
Affinity purification coupled with mass spectrometry proteomics
(156)
Data-dependent acquisition
(100)
Gel-based experiment
(76)
Mass spectrometry assay
(57)
Data-independent acquisition
(48)
SWATH MS
(34)
EI
(19)
Chemical cross-linking coupled with mass spectrometry proteomics
(19)
Top-down proteomics
(18)
SRM/MRM
(16)
Illumina 15K
(8)
NMR spectroscopy
(7)
NMR
(3)
Illumina HiSeq 2500
(2)
Illumina HiSeq 2000
(2)
ILLUMINA, NextSeq 500, HiSeq X Ten
(1)
ILLUMINA, Illumina MiSeq
(1)
Illumina (various), Illumina (Various)
(1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500
(1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0
(1)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(1)
Illumina Genome Analyzer II
(1)
L1000
(1)
Flow cytometry
(1)
MALDI
(1)
Instrument Platform
Illumina NovaSeq 6000
(172)
NextSeq 500
(115)
Illumina HiSeq 2000
(113)
Illumina HiSeq 2500
(91)
Illumina HiSeq 4000
(74)
NA
(66)
Scanning hardware
(30)
Illumina MiSeq
(28)
Illumina NovaSeq X
(27)
NextSeq 550
(25)
Illumina Genome Analyzer IIx
(13)
Axon GenePix 4000B scanning hardware
(13)
NextSeq 2000
(12)
Illumina HiSeq 3000
(11)
Illumina Genome Analyzer II
(10)
Axon- GenePix4000B
(9)
GenePix 4000B [Axon Instruments]
(9)
ScanArray 5000 [PerkinElmer]
(8)
AB SOLiD 4 System
(7)
418 [Affymetrix]
(7)
Illumina HiSeq 1000
(7)
Agilent Technologies G2565CA microarray scanner
(6)
ScanArray 4000 [PerkinElmer]
(6)
Generation III Array Scanner [Amersham]
(6)
ScanArray 4000XL [PerkinElmer]
(6)
DNBSEQ-G400
(6)
BGISEQ-500
(6)
Illumina iScan
(5)
HiSeq X Ten
(5)
Illumina HiSeq 1500
(5)
Publication Date
2010
(835)
2013
(769)
2014
(667)
2011
(618)
2015
(584)
2012
(579)
2016
(430)
2009
(395)
2025
(370)
2021
(344)
2008
(341)
2022
(329)
2024
(326)
2023
(292)
2026
(288)
2020
(252)
2019
(220)
2018
(210)
2007
(176)
2017
(162)
2005
(145)
2006
(114)
2004
(20)
2003
(10)
2027
(1)
UNIPROT ID/AC
P31057
(2)
P0ABQ4
(2)
P0A825
(2)
P08192
(2)
P0AC13
(2)
P26281
(2)
A0A1S3MBI7
(1)
A0A1S3RDV7
(1)
A0A1S3SLA8
(1)
B5X3P0
(1)
A0A1S3N3T3
(1)
A0A1S3NZZ4
(1)
A0A1S3P094
(1)
A0A1S3PY93
(1)
Q19VI0
(1)
A0A1S3M1N8
(1)
A0A1S3NHN0
(1)
A0A1S3KZD6
(1)
A0A1S3SD21
(1)
A0A1S3LDQ3
(1)
A0A1S3P3J9
(1)
A0A1S3LD76
(1)
A0A1S3LEH9
(1)
A0A1S3MF70
(1)
A0A1S3MF67
(1)
A0A1S3MEX0
(1)
A0A1S3MEU5
(1)
A0A1S3RYH9
(1)
A0A1S3RYI5
(1)
A0A1S3P4C7
(1)
ENSEMBL ID
ENSG00000170477
(17)
ENSG00000147251
(8)
ENSG00000247315
(5)
ENSG00000214897
(2)
ENSG00000229353
(2)
ENSG00000204131
(1)
CHEBI ID
CHEBI:15428
(35)
CHEBI:17822
(27)
CHEBI:16027
(24)
CHEBI:16761
(20)
CHEBI:15422
(19)
CHEBI:15846
(14)
CHEBI:17552
(12)
CHEBI:29108
(4)
CHEBI:29987
(3)
CHEBI:57451
(3)
CHEBI:25523
(3)
CHEBI:26020
(3)
CHEBI:29101
(3)
CHEBI:12071
(3)
CHEBI:16474
(3)
CHEBI:38793
(2)
CHEBI:38797
(2)
CHEBI:67016
(2)
CHEBI:17836
(2)
CHEBI:26689
(2)
CHEBI:17287
(2)
CHEBI:15996
(2)
CHEBI:17138
(2)
CHEBI:15361
(2)
CHEBI:16908
(2)
CHEBI:18021
(2)
CHEBI:13097
(1)
CHEBI:21278
(1)
CHEBI:63163
(1)
CHEBI:6209
(1)
Metabolite Name
Hypoxanthine
(28)
Uracil
(26)
Adenosine
(25)
Adenine
(24)
L-Phenylalanine
(24)
Uridine
(23)
Indole
(22)
Guanine
(22)
Choline
(22)
Betaine
(21)
Creatinine
(21)
Creatine
(21)
Taurine
(21)
Xanthine
(21)
Guanosine
(21)
L-Valine
(20)
Xanthosine
(19)
Cytosine
(19)
L-Carnitine
(19)
L-Arginine
(19)
Cytidine
(19)
Inosine
(19)
Riboflavin
(18)
Azelaic acid
(18)
L-Proline
(18)
L-Glutamine
(18)
L-Tyrosine
(17)
Spermidine
(17)
L-Tryptophan
(17)
L-Methionine
(17)
First Public Date
2024
(131)
2023
(120)
2025
(113)
2014
(107)
2022
(101)
2026
(91)
2019
(76)
2020
(70)
2021
(60)
2018
(51)
2017
(47)
2013
(28)
2015
(26)
2016
(17)
2012
(1)
Modelling Approach
Ordinary differential equation model
(47)
Constraint-based model
(3)
Computational model
(1)
Differential algebraic equation model
(1)
Study status
Recruiting
(8)
Not yet recruiting
(7)
Terminated
(3)
Completed
(3)
Active, not recruiting
(2)
Not provided
(1)
Lab affiliation
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(29)
School of Life Sciences, University of Warwick
(9)
The University of Melbourne
(9)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France
(8)
University of Warwick
(8)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA
(7)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA
(7)
Kyungpook national university
(6)
EDyP
(6)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany
(5)
WEHI
(5)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China
(4)
Rochester Institute of Technology
(4)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia
(4)
Proteomics, Metabolomics & Mass Spectrometry Laboratory, Institute for the Animal Production System in the Mediterranean Environment (ISPAAM), National Research Council, Piazzale Enrico Fermi 1, 80055 Portici (NA), Italy
(4)
Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic
(4)
Laboratory of Nucleic Acids, NHLBI / NIH, United States
(4)
STORM Therapeutics Limited Cambridge United Kingdom
(3)
The Walter and Eliza Hall Institute
(3)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205
(3)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark
(3)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences
(3)
Lab. Neuro-Oncology and Clinical Cancer Proteomics, Erasmus Medical Center, the Netherlands
(3)
Laboratory of viability of microorganisms, Federal research center “Fundamentals of biotechnology” of Russian Academy of sciences, Moscow, Russia
(3)
University of Nebraska - Lincoln
(3)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center
(3)
Carnegie Institution at Stanford
(3)
The University of Sydney
(3)
Department of Biochemistry and Molecular Biology and Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton 3800, VIC, Australia
(3)
Carnegie Mass Spec Facility
(3)
Tags
pathogen
(58)
pathogen:bacterium
(30)
pathogen:virus
(19)
xref:PubMed:41172988
(7)
xref:PubMed:30128894
(5)
pathogen:helminth
(5)
xref:PubMed:31354538
(4)
xref:PubMed:34195686
(4)
xref:PubMed:40810618
(3)
xref:PubMed:36980289
(3)
xref:PubMed:39830368
(3)
xref:PubMed:34755095
(3)
xref:PubMed:38564478
(2)
xref:PubMed:38987587
(2)
xref:PubMed:36652202
(2)
xref:PubMed:34956208
(2)
xref:PubMed:24812327
(2)
xref:PubMed:24143179
(2)
xref:PubMed:24444870
(2)
xref:PubMed:37446170
(2)
xref:PubMed:23467085
(2)
xref:PubMed:32725842
(2)
xref:PubMed:38409236
(2)
xref:PubMed:40612514
(2)
xref:PubMed:33864216
(2)
xref:PubMed:35357563
(2)
xref:PubMed:24682306
(2)
xref:PubMed:40596037
(2)
xref:PubMed:37563227
(2)
xref:PubMed:38848365
(2)
Keyword
NA
(3)
SOMATULINE AUTOGEL 120 MG INJ SOL 1X0.5ML/120MG
(1)
Tumour neoantigens
(1)
Tumor neoantigens
(1)
Anti-PD1
(1)
CALCIUM LEVOFOLINATE PENTAHYDRATE
(1)
GSI
(1)
Gilead
(1)
Gilead Sciences
(1)
GS-6624
(1)
Anti-MCSF
(1)
Anti PD-L1
(1)
Anti 4-1BB
(1)
OX40 agonist
(1)
Anti M-CSF
(1)
TLR9 agonist
(1)
Squamous cell carcinoma of head and neck (SCCHN)
(1)
Triple negative breast cancer (TNBC)
(1)
Platinum resistant ovarian cancer
(1)
TGCT/PVNS
(1)
Small cell lung cancer (SCLC)
(1)
Monoclonal antibody
(1)
Cancer vaccine
(1)
Oncology
(1)
KRAS
(1)
Nivolumab
(1)
Immunotherapy
(1)
Irinotecan
(1)
Avelumab
(1)
Leucovorin
(1)
IsPrivate
False
(55)
Model Flag
Non Kinetic
(2)
Submitter Keywords
FROG
(2)
FAIR-AIML
(1)
Machine Learning Model
(1)
Classification
bacteria
(30)
viruses
(19)
helminths
(5)
fungi
(2)
protozoa
(2)
Modification
Not available
(6)
4x(15)N labeled L-arginine
(4)
15.994915
(3)
57.021464
(3)
N6
(2)
2x(15)N labeled L-lysine
(2)
MTRAQ heavy
(1)
79.966331
(1)
6-dioxaoctanediamine derivatized cysteine
(1)
42.010565
(1)
4
(1)
N6-dimethyl-L-lysine
(1)
Study type
Transcription profiling by array
(3419)
RNA-seq of coding RNA
(696)
ChIP-seq
(432)
ChIP-chip by tiling array
(212)
Methylation profiling by array
(180)
Comparative genomic hybridization by array
(178)
ChIP-chip by array
(116)
RNA-seq of non coding RNA
(110)
MicroRNA profiling by array
(104)
Other
(103)
Unknown experiment type
(98)
RNA-seq of coding RNA from single cells
(89)
DNA-seq
(58)
Methylation profiling by high throughput sequencing
(55)
Genotyping by array
(53)
Transcription profiling by tiling array
(50)
Transcription profiling by RT-PCR
(29)
RNA-seq of total RNA
(23)
Animal - High-throughput sequencing
(22)
Proteomic profiling by array
(18)
ATAC-seq
(17)
Cell line - High-throughput sequencing
(15)
High-throughput sequencing
(14)
Transcription profiling by SAGE
(11)
Human - High-throughput sequencing
(11)
Bisulfite-seq
(9)
Animal - One-color microarray
(8)
Human - One-color microarray
(8)
RNAi profiling by array
(8)
RIP-seq
(8)
Release Date
2022
(6233)
2021
(5583)
2023
(5467)
2025
(5314)
2024
(4622)
2020
(4607)
2019
(3605)
2018
(3063)
2017
(2391)
2016
(2366)
2015
(2251)
2014
(2025)
2013
(1810)
2010
(1543)
2012
(1449)
2011
(1422)
2009
(992)
2026
(787)
2008
(769)
2007
(423)
2006
(284)
2005
(246)
2004
(132)
2003
(92)
2001
(78)
2000
(55)
2002
(48)
1999
(42)
1998
(32)
1997
(20)
Location
China
(10)
India
(6)
Japan
(3)
Poland
(2)
Germany
(2)
Netherlands
(2)
Spain
(2)
Italy
(2)
France
(2)
United States
(2)
Singapore
(1)
Taiwan
(1)
Australia
(1)
United Kingdom
(1)
Russia
(1)
Canada
(1)
Czechia
(1)
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Mycobacterium tuberculosis NA-A0008
Mycobacterium tuberculosis NA-A0008 Genome sequencing and assembly
PRJNA168604
|
ENA
Cite
Mycobacterium tuberculosis NA-A0009
Mycobacterium tuberculosis NA-A0009 Genome sequencing and assembly
PRJNA168605
|
ENA
Cite
Arthrobacter sp. NA-172
Arthrobacter sp. NA-172 Genome sequencing
PRJNA1169770
|
ENA
Cite
NA
Not available
PRJEB61709
|
ENA
Cite
Na
Not available
PRJEB72373
|
ENA
Cite
NA
Not available
PRJEB43403
|
ENA
Cite
NA
Not available
PRJEB64417
|
ENA
Cite
NA
Not available
PRJEB47188
|
ENA
Cite
NA
Not available
PRJEB5759
|
ENA
Cite
NA
Not available
PRJEB32333
|
ENA
Cite
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