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Transcriptomics
(863)
Unknown
(514)
Genomics
(470)
Metabolomics
(67)
Proteomics
(45)
Other
(14)
Organisms
Homo sapiens
(289)
Mus musculus
(208)
Arabidopsis thaliana
(150)
Caenorhabditis elegans
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Saccharomyces cerevisiae
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Drosophila melanogaster
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Rattus norvegicus
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Escherichia coli
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Schizosaccharomyces pombe
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Actinobacillus pleuropneumoniae
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Oryza sativa Japonica Group
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Bacillus subtilis subsp. subtilis str. 168
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Rhizobium leguminosarum
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Oryza sativa
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Bos taurus
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Escherichia coli str. K-12 substr. MG1655
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Actinobacillus pleuropneumoniae serovar 1 str. 4074
(2)
Rhodopseudomonas palustris
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Haemophilus influenzae R2866
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Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
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Yarrowia lipolytica
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Mycobacterium tuberculosis
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Organisms
Mus musculus
(151)
Homo sapiens
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Arabidopsis thaliana
(20)
Escherichia coli
(11)
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Saccharomyces cerevisiae
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Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028
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Methylosinus trichosporium OB3b
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Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
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Repository
biostudies-arrayexpress
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geo
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pride
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Mass spectrometry
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NextSeq 500
(16)
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GenePix 4000A [Axon Instruments]
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(1)
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(1)
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(1)
Publication Date
2014
(107)
2013
(84)
2011
(83)
2010
(82)
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(76)
2008
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2025
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CHEBI ID
CHEBI:16737
(9)
CHEBI:16919
(9)
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(9)
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(8)
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(8)
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CHEBI:26271
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CHEBI:25094
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CHEBI:78320
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(6)
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(6)
Metabolite Name
Xanthine
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(6)
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(5)
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UMP
(5)
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(5)
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Hippuric acid
(5)
Creatinine
(5)
Allantoin
(5)
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(5)
Fumaric acid
(5)
Cholesterol
(4)
Phosphoenolpyruvic acid
(4)
Valine
(4)
Isovaleric acid
(4)
Beta-Alanine
(4)
Lactate
(4)
First Public Date
2025
(71)
2026
(69)
2023
(43)
2014
(42)
2024
(35)
2022
(22)
2021
(22)
2020
(22)
2019
(19)
2017
(10)
2016
(10)
2015
(8)
2018
(7)
2013
(1)
Classification
bacteria
(21)
protozoa
(3)
fungi
(2)
Study type
Transcription profiling by array
(484)
RNA-seq of coding RNA
(122)
ChIP-seq
(63)
Unknown experiment type
(20)
ChIP-chip by tiling array
(10)
RNA-seq of coding RNA from single cells
(9)
RNA-seq of non coding RNA
(9)
ChIP-chip by array
(8)
Transcription profiling by tiling array
(7)
Transcription profiling by RT-PCR
(7)
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(5)
Other
(5)
Methylation profiling by array
(5)
Proteomic profiling by array
(5)
Human - Two-color microarray
(3)
RNAi profiling by array
(3)
RNA-seq of total RNA
(3)
Comparative genomic hybridization by array
(2)
Human - High-throughput sequencing
(1)
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(1)
Human - One-color microarray
(1)
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(1)
Genotyping by array
(1)
MicroRNA profiling by high throughput sequencing
(1)
Spatial transcriptomics by high-throughput sequencing
(1)
ATAC-seq
(1)
RIP-seq
(1)
Single nucleus RNA sequencing
(1)
MicroRNA profiling by array
(1)
DNA-seq
(1)
Release Date
2014
(115)
2013
(94)
2010
(92)
2022
(91)
2011
(90)
2008
(83)
2012
(79)
2016
(72)
2023
(65)
2025
(64)
2015
(58)
2024
(56)
2020
(55)
2021
(52)
2018
(38)
2019
(34)
2017
(32)
2009
(30)
2007
(23)
2005
(20)
2026
(17)
2006
(17)
2004
(9)
2003
(8)
1999
(2)
2001
(1)
2000
(1)
1998
(1)
Lab affiliation
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany
(1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA
(1)
Division of Biochemistry and Structural Biology, Department of Chemistry, Lund University, SE-22362, Lund, Sweden
(1)
Geriatrics and Gerontology, Department of Medicine, University of Wisconsin - Madison
(1)
Head of the Curie Institute Mass Spectrometry Platform
(1)
Institute of Pharmacy and Molecular Biotechnology (IPMB), Heidelberg University
(1)
MRC London Institute of Medical Sciences Proteomics & Metabolomics Facility Hammersmith Hospital Campus Du Cane Road London, W12 0NN United Kingdom
(1)
Max Planck Insitute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany
(1)
Max Planck Institute for Terrestrial Microbiology Marburg Germany
(1)
National Laboratory of Biosciences (LNBio/CNPEM)
(1)
Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology
(1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(1)
SYNMIKRO, Zentrum für Synthetische Mikrobiologie, Philipps Universität Marburg, Karl-von-Frisch-Str. 14, 35043 Marburg, Germany Max-Planck-Institut für Terrestrische Mikrobiologie, Karl-von-Frisch Straße 16, 35043 Marburg, Germany
(1)
Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Biology, Cambridge, MA, USA
(1)
Tags
pathogen
(26)
pathogen:bacterium
(21)
xref:PubMed:41408051
(4)
xref:PubMed:40050704
(4)
xref:PubMed:33290723
(3)
xref:PubMed:42162436
(3)
pathogen:protozoan
(3)
xref:PubMed:20643653
(2)
xref:PubMed:33619381
(2)
xref:PubMed:42580337
(2)
xref:PubMed:35098926
(2)
xref:PubMed:35610211
(2)
xref:PubMed:27256882
(2)
xref:PubMed:42096291
(2)
xref:PubMed:37586364
(2)
xref:PubMed:41241829
(2)
xref:PubMed:35545049
(2)
xref:PubMed:37558881
(2)
xref:PubMed:24813611
(2)
pathogen:fungus
(2)
xref:PubMed:21856199
(1)
xref:PubMed:21320583
(1)
xref:PubMed:27508874
(1)
xref:PubMed:37544632
(1)
xref:PubMed:20439498
(1)
xref:ArrayExpress:E-MTAB-4939
(1)
xref:EuropePMC:PMC13416282
(1)
xref:PubMed:41400119
(1)
xref:PubMed:41665963
(1)
xref:PubMed:39097623
(1)
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Hidden features of NAD-RNA epitranscriptome in Drosophila life cycle
Hidden features of NAD-RNA epitranscriptome in Drosophila life cycle
PRJNA950069
|
ENA
Cite
Landscape of RNA NAD+ capping in Arabidopsis unopened flower bud
Landscape of RNA NAD+ capping in Arabidopsis unopened flower bud
PRJNA596802
|
ENA
Cite
ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA
ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA
PRJNA800040
|
ENA
Cite
Xrn1 Modulates Mitochondrial NAD Levels through NAD-Capped RNA Decay
Xrn1 Modulates Mitochondrial NAD Levels through NAD-Capped RNA Decay
ORGANISM(S):
Saccharomyces Cerevisiae (ncbitaxon:4932)
2021-06-10
|
MSV000087605
|
MassIVE
Cite
Landscape of RNA NAD+ capping in Arabidopsis seedling with ABA treatment
Landscape of RNA NAD+ capping in Arabidopsis seedling with ABA treatment
PRJNA596803
|
ENA
Cite
5’-NAD-RNA identification in E. coli BW25113 wt, nudC and csdA knockouts
5’-NAD-RNA identification in E. coli BW25113 wt, nudC and csdA knockouts
PRJNA934575
|
ENA
Cite
The RNA NAD+ cap is widespread in the Arabidopsis transcriptome and probably promotes translation
The RNA NAD+ cap is widespread in the Arabidopsis transcriptome and probably promotes translation
PRJNA524135
|
ENA
Cite
A Novel NAD-RNA Decapping Pathway Discovered by Synthetic Light-Up NAD-RNAs.
Not available
S-EPMC7226252
|
biostudies-literature
Cite
Identification of NAD-RNA species and ADPR-RNA decapping in Archaea.
Not available
S-EPMC10663502
|
biostudies-literature
Cite
Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD+ capping.
Not available
S-EPMC8040648
|
biostudies-literature
Cite
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