Nakagawa S S - OmicsDI

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Unknown (2392)
Transcriptomics (64)
Proteomics (50)
Genomics (13)
Metabolomics (4)
Other (1)

Organisms

Homo sapiens (46)
Mus musculus (28)
cellular organisms (22)
Thermus thermophilus HB8 (11)
Drosophila melanogaster (4)
Arabidopsis thaliana (3)
Solanum lycopersicum (2)
Schizosaccharomyces pombe (1)
Canis lupus familiaris (1)
Gallus gallus (1)
Rattus norvegicus (1)
Cryptococcus neoformans (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (67)
jPOST (39)
EGA (8)
pride (7)
MassIVE (4)
MetaboLights (4)
geo (1)
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ENA (1)

Tissue

Blood plasma (1)
Cell culture (1)
Chorionic trophoblast cell (1)
Embryonic stem cell (1)
Placenta (1)
Skeletal muscle (1)

Disease

Not Available (1)
Pre-eclampsia (1)

Technology Type

Mass Spectrometry (7)
Bottom-up proteomics (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
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Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive Plus (1)
Gas Chromatography MS - positive (1)

Publication Date

2024 (22)
2010 (17)
2014 (10)
2025 (9)
2011 (8)
2012 (7)
2026 (7)
2016 (6)
2015 (6)
2013 (5)
2009 (5)
2022 (5)
2023 (4)
2008 (3)
2021 (2)
2005 (2)
2020 (2)
2004 (1)
2018 (1)

CHEBI ID

CHEBI:10049 (3)
CHEBI:10072 (3)
CHEBI:1026 (3)
CHEBI:1148 (3)
CHEBI:1157 (3)
CHEBI:132546 (3)
CHEBI:132958 (3)
CHEBI:134206 (3)
CHEBI:135063 (3)
CHEBI:139328 (3)
CHEBI:14314 (3)
CHEBI:143269 (3)
CHEBI:14336 (3)
CHEBI:1456 (3)
CHEBI:14973 (3)
CHEBI:15318 (3)
CHEBI:15346 (3)
CHEBI:15351 (3)
CHEBI:15354 (3)
CHEBI:15355 (3)
CHEBI:15356 (3)
CHEBI:15380 (3)
CHEBI:15422 (3)
CHEBI:15428 (3)
CHEBI:1547 (3)
CHEBI:15479 (3)
CHEBI:15531 (3)
CHEBI:15551 (3)
CHEBI:15553 (3)
CHEBI:15573 (3)

Metabolite Name

(Methylthio)acetate (2)
1-Aminoethylphosphonate (2)
10-Hydroxydecanoate (2)
2',3'-cCMP (2)
2,3-DPG (2,3-Disphospho-D-glycerate) (2)
2,3-Pyridinedicarboxylate (2)
2,4-Dihydroxypyrimidine-5-carboxylate (2)
2,5-Dihydroxybenzoate (2)
2-Amino-3-phosphonopropionate (2)
2-Aminoethylphosphonate (2)
2-Deoxyglucose 6-phosphate (2)
2-Deoxyribose 1-phosphate (2)
2-Furoate (2)
2-Hydroxy-4-methylpentanoate (2)
2-Hydroxybutyrate (2)
2-Hydroxyglutarate (2)
2-Hydroxyisobutyrate (2)
2-Hydroxyoctanoate (2)
2-Hydroxypentanoate (2)
2-Hydroxyphenylacetate (2)
2-Isopropylmalate (2)
2-Oxoadipate (2)
2-Oxobutyrate (2)
2-Oxoglutarate (2)
2-Oxoisopentanoate (2)
2-Oxooctanoate (2)
2-Quinolinecarboxylate (2)
2-Thiopheneacetate (2)
2PG (D-Glycerate 2-phosphate) (2)
3',5'-Cyclic dAMP (2)

First Public Date

2014 (1)

Study type

Transcription profiling by array (45)
RNA-seq of coding RNA (8)
Comparative genomic hybridization by array (3)
ChIP-seq (3)
Unknown experiment type (2)
ChIP-chip by array (2)
ChIP-chip by tiling array (1)
Plant - One-color microarray (1)
DNA-seq (1)
Methylation profiling by array (1)

Release Date

2022 (281)
2025 (262)
2023 (252)
2021 (251)
2024 (201)
2020 (189)
2018 (155)
2019 (145)
2017 (136)
2016 (108)
2015 (95)
2014 (70)
2013 (49)
2011 (46)
2026 (44)
2010 (41)
2012 (39)
2009 (21)
2008 (21)
2004 (9)
2006 (9)
2005 (8)
2007 (6)
2002 (6)
2003 (5)
1997 (4)
2000 (2)
1999 (2)
1998 (1)

Lab affiliation

Center for Genomic Regulation (CRG) University Pompeu Fabra (UPF) (1)
Department of Nanobiotechnology, Vision Research Foundation, Sankara Nethralaya, 18 College Road, Chennai, Tamil Nadu, 600 006, India. (1)
Department of Physiology, Medical College of Wisconsin, Wisconsin, USA (1)
Graduate school of pharmaceutical sciences (1)
Laboratory for Biomarker Development (1)
Max-Delbrück Center for Molecular Medicine, Robert-Rössle Str. 10, 13125 Berlin, Germany (1)
Proteome Research (AG Stühler) Heinrich Heine University Düsseldorf Universitätsstraße 1 40225 Düsseldorf Germany (1)

Tags

xref:PubMed:15837623 (1)

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Genome-wide localization of ORC and MCM binding sites and identification of replication origins in S. pombe

DNA replication of eukaryotic chromosomes initiates at a number of discrete loci, called replication origins. Distribution and regulation of origins are important for complete duplication of the genome. Here, we determined locations of Orc1 and Mcm6, components of pre-replicative complex (pre-RC),...

ORGANISM(S): Schizosaccharomyces pombe

2010-06-11 | E-GEOD-6523 | biostudies-arrayexpress

Primary human neuroblastoma

Reference1: Ohira M, Oba S, Nakamura Y, Isogai E, Kaneko S, Nakagawa A, Hirata T, Kubo H, Goto T, Yamada S, Yoshida Y, Fuchioka M, Ishii S, Nakagawara A. Expression profiling of human primary Expression profiling using a tumor-specific cDNA microarray predicts the prognosis of intermediate risk neur...

ORGANISM(S): Homo sapiens

2005-05-12 | E-GEOD-2283 | biostudies-arrayexpress

Randomized controlled trial of S-1 versus docetaxel in patients with non-small-cell lung cancer previously treated with platinum-based chemotherapy (East Asia S-1 Trial in Lung Cancer).

Not available

S-EPMC5834128 | biostudies-literature

(R,S)-tetrahydropapaveroline production by stepwise fermentation using engineered Escherichia coli.

Not available

S-EPMC4204043 | biostudies-literature

Structures of a putative RNA 5-methyluridine methyltransferase, Thermus thermophilus TTHA1280, and its complex with S-adenosyl-L-homocysteine.

Not available

S-EPMC1991318 | biostudies-literature