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TranscriptomicsIdentification of direct target genes of the tomato fruit-ripening regulator RIN by promoter ChIP-chip
The tomato (Solanum lycopersicum) MADS-box transcription factor RIN, one of the earliest-acting fruit-ripening regulators, is required for both ethylene-dependent and -independent regulatory pathways for fruit ripeing. Here, we performed chromatin immunoprecipitation coupled with a DNA microarray (...
ORGANISM(S): Solanum lycopersicum 
2013-03-28 | E-GEOD-40257 | biostudies-arrayexpress
TranscriptomicsIdentification of direct target genes of the tomato FRUITFULL homologs during ripening by promoter ChIP-chip
Tomato (Solanum lycopersicum) has two MADS-box FRUITFULL homologs, FUL1 and FUL2, both of which are able to interact with the master ripening regulator RIN. Here, we performed chromatin immunoprecipitation coupled with a DNA microarray (ChIP-chip) for the 2-kb upstream putative promoters of whole t...
ORGANISM(S): Solanum lycopersicum 
2014-06-23 | E-GEOD-49125 | biostudies-arrayexpress
TranscriptomicsGlobal gene expression analysis of normal and ripening inhibitor (rin) mutant tomatoes during ripening
Ripening is an important stage of fruit development to determine its quality as a diet. A tomato (Solanum lycopersicum) MADS-box transcription factor, RIPENING INHIBITOR (RIN), has been believed to serve as a regulator of ripening lying upstream of ethylene-dependent and ethylene-independent pathway...
ORGANISM(S): Solanum lycopersicum 
2012-04-01 | E-GEOD-28564 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of tomato fruits of a FRUITFULL-suppressed line and rin mutant by next generation RNA sequencing
The tomato MADS-box FRUITFULL (FUL) homologs, FUL1 and FUL2, interact with the main ripening regulator RIPENING INHIBITOR (RIN). To clarify their role in fruit ripening, we generated FUL1/FUL2-suppressed transgenic lines by RNAi. We found that five transgenic lines bearing fruits that did not ripen ...
ORGANISM(S): Solanum lycopersicum 
2014-06-23 | E-GEOD-49289 | biostudies-arrayexpress
TranscriptomicsExpression data from stomach of germ-free and gnotobiotic mice
The aim of this study was to examine the role of indigenous lactobacilli in the physiological development of the stomach in mice using microarray analysis. In lactobacilli-associated gnotobiotic mice, an increased expression of the genes related to the muscle system development, such as nebulin and ...
ORGANISM(S): Mus musculus 
2011-04-28 | E-GEOD-28895 | biostudies-arrayexpress
TranscriptomicsAnalysis of small RNAs in piRNA pathway mutant mouse testes
Piwi-interacting RNAs are 25-32 nt small RNAs bound to Piwi proteins. To know the steps where factors involved in the piRNA biogenesis (MILI, MIWI2, ZUC (MitoPLD), MVH) work, we sequenced small RNAs from mutant mouse testes and analyzed piRNAs. Examination of small RNAs in testes of mutant mouse
ORGANISM(S): Mus musculus 
2010-05-27 | E-GEOD-20327 | biostudies-arrayexpress
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