Nakayama S S - OmicsDI

Show results for

Unknown (1900)
Transcriptomics (47)
Proteomics (41)
Genomics (3)
Metabolomics (3)
Models (2)

Organisms

Andropogon gerardi (28)
Bacteria (28)
Canis lupus familiaris (28)
Clostridium perfringens (28)
Cnidaria (28)
Cricetulus griseus (28)
Eukaryota (28)
Fasciola (28)
Hepatitis B virus (28)
Human betaherpesvirus 5 (28)
Madurella mycetomatis (28)
Mesocricetus auratus (28)
Miscanthus x giganteus (28)
Mus musculus (28)
Mus musculus (22)
Homo sapiens (17)
Xenopus laevis (4)
cellular organisms (3)
Gallus gallus (3)
Schizosaccharomyces pombe (2)
Oryza sativa (2)
Glycine max (2)
Rattus norvegicus (2)
Hymenochirus boettgeri (1)
Enterococcus faecalis V583 (1)
Bacteroides fragilis (1)
Escherichia coli (1)
Arabidopsis thaliana (1)
Cyanidioschyzon merolae (1)
Rattus rattus (1)

Repository

biostudies-arrayexpress (50)
pride (28)
jPOST (12)
MetaboLights (3)
BioModels (2)
MassIVE (1)

Tissue

Epithelial cell (10)
Cell culture (4)
Kidney (2)
Liver (2)
Type B pancreatic cell (2)
Blood (1)
Blood plasma (1)
Bone marrow (1)
Early embryonic cell (1)
Endocrine pancreas (1)
Fibroblast (1)
HeLa cell (1)
Lung (1)
Nasal mucosa (1)
Pancreatic endocrine cell (1)
Pancreatic islet (1)
Pancreatic islet beta cell (1)
Plant cell (1)
Primary cell (1)
T cell (1)
Type B pancreatic cell differentiation (1)

Disease

Type 1 diabetes mellitus (2)
Osteosarcoma subtype fibroblastic (1)
COVID-19 (1)
Disease free (1)
Insulinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (28)
Shotgun proteomics (15)
Affinity purification coupled with mass spectrometry proteomics (8)
Mass spectrometry (3)
Data-dependent acquisition (2)
Top-down proteomics (2)
All-ion fragmentation (1)
Bottom-up proteomics (1)
Immunopeptidomics (1)
SWATH MS (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
Hamamatsu Nanozoomer S60 (1)
Agilent Technologies Microarray Scanner (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ (1)

Publication Date

2023 (15)
2016 (8)
2013 (8)
2010 (7)
2008 (7)
2021 (7)
2014 (6)
2012 (6)
2025 (6)
2015 (5)
2024 (4)
2022 (4)
2017 (4)
2019 (3)
2018 (2)
2020 (2)
2011 (1)
2005 (1)

UNIPROT ID/AC

P17858 (2)
P04075 (2)
P09467 (2)
P23443 (1)
P42345 (1)
P06213 (1)
P31749 (1)

CHEBI ID

CHEBI:27541 (3)
CHEBI:194704 (3)
CHEBI:180089 (3)
CHEBI:4075 (3)
CHEBI:47870 (3)
CHEBI:18189 (3)
CHEBI:28774 (3)
CHEBI:25166 (3)
CHEBI:5854 (3)
CHEBI:6263 (3)
CHEBI:88164 (3)
CHEBI:28182 (3)
CHEBI:1456 (3)
CHEBI:17434 (3)
CHEBI:27413 (3)
CHEBI:177535 (3)
CHEBI:7035 (3)
CHEBI:177461 (3)
CHEBI:44423 (3)
CHEBI:139328 (3)
CHEBI:57579 (2)
CHEBI:30915 (2)
CHEBI:30887 (2)
CHEBI:6650 (2)
CHEBI:30769 (2)
CHEBI:28602 (2)
CHEBI:15946 (2)
CHEBI:18021 (2)
CHEBI:16905 (2)
CHEBI:36080 (1)

Metabolite Name

Deamido-NAD+ (2)
TDP-glucose (2)
Adenylosuccinate (2)
Malonyl CoA (2)
Isobutyryl CoA (2)
P1, P4-Di(adenosine-5') tetraphosphate (2)
Cholate (2)
PRPP (2)
Orotidine 5'-monophosphate (2)
CGMP (2)
CIMP (2)
Ribulose 1,5-diphosphate (2)
2',3'-cCMP (2)
N-Acetylglucosamine 6-phosphate (2)
Galacturonate 1-phosphate (2)
2-Deoxyglucose 6-phosphate (2)
2-Deoxyribose 1-phosphate (2)
Mucate (2)
Saccharate (2)
Benzylsuccinate (2)
Xanthurenate (2)
3-Indolebutyrate (2)
Dodecanoate (2)
O-Hydroxyhippurate (2)
Trans-4-Hydroxy-3-methoxycinnamate (2)
Phenaceturate (2)
10-Hydroxydecanoate (2)
Azelate (2)
Undecanoate (2)
O-Phosphoserine (2)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (8)
Other (3)
ChIP-seq (3)
ChIP-chip by tiling array (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
RNAi profiling by array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (216)
2025 (214)
2023 (210)
2021 (208)
2024 (160)
2020 (141)
2019 (119)
2017 (93)
2018 (91)
2016 (80)
2014 (67)
2015 (61)
2013 (56)
2012 (39)
2010 (32)
2026 (30)
2008 (26)
2009 (22)
2011 (20)
2006 (16)
2007 (14)
2005 (10)
2003 (7)
2004 (4)
2001 (4)
2000 (3)
1999 (3)
2002 (2)
1997 (1)

Lab affiliation

University of Bristol (7)
Department of Pharmacology, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, Korea (2)
Kyushu University (2)
1Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan (1)
Alitea Biotechnology GmbH (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Cincinnati Children’s Hospital Medical Center (1)
Core Facility - Metabolomics and Proteomics Core, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Neuherberg, Germany (1)
Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan (1)
Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, Japan (1)
Division of Biological Science, Graduate School of Science, Nagoya University (1)
Justus-Liebig-University Giessen (1)
Laboratory for Biomarker Development (1)
Laboratory for Cell Polarity and Organogenesis Max Planck Institute for Heart and Lung Research D-61231, Bad Nauheim, Germany (1)
Laboratory for Developmental Genetics, RIKEN Center for Integrative Medical Sciences (1)
Max Planck Institute for Heart and Lung Research, Laboratory for Cell Polarity and Organogenesis, Germany (1)
Nakayama K.I. lab, Dep. Mol. Cell. Biol., Med. Inst. Bioreg, Kyushu University (1)
Proteomics Head, British Columbia Cancer Agency, Vancouver, Canada (1)
Université Paris Cité, Institut Cochin, CNRS, INSERM, Paris, France (1)