Nam R R - OmicsDI

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Unknown (1426)
Transcriptomics (188)
Proteomics (94)
Genomics (31)
Metabolomics (4)
Genomic (1)

Organisms

Mus musculus (84)
Homo sapiens (75)
Arabidopsis thaliana (11)
Oryza sativa (4)
Ovis aries (4)
Rattus norvegicus (4)
Caenorhabditis elegans (3)
Sus scrofa (3)
Zea mays (3)
Xenopus laevis (2)
Macaca fascicularis (2)
Lepidium sativum (2)
Medicago truncatula (2)
Gallus gallus (2)
Drosophila melanogaster (2)
Danio rerio (2)
Ostrinia scapulalis (1)
Bdellovibrio bacteriovorus HD100 (1)
Mycobacterium avium subsp. paratuberculosis K-10 (1)
Mustela putorius furo (1)
Brucella melitensis (1)
Streptococcus mutans UA159 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Coturnix japonica (1)
Bacillus subtilis (1)
Aedes aegypti (1)
Populus tremula x Populus alba (1)
Solanum tuberosum (1)
Anas platyrhynchos (1)
Triticum aestivum (1)

Organisms

Magnolia champaca (1)
Zea mays (1)

Repository

biostudies-arrayexpress (206)
pride (83)
EGA (12)
MassIVE (7)
MetaboLights (4)
ENA (2)
dbGaP (1)
geo (1)
jPOST (1)
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Tissue

Cell culture (30)
Liver (5)
Stromal cell (4)
Blood (3)
Subcutaneous adipose tissue (3)
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Heart (2)
Kidney cell line (2)
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Testis (2)
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Adipose-derived stromal cell (1)
Blood plasma (1)
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Early embryonic cell (1)
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Forelimb muscle (1)
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Lung (1)
Macrophage (1)

Disease

Simpson-Golabi-Behmel syndrome type 1 (4)
Disease free (3)
Limb-girdle muscular dystrophy (2)
T. circumcincta infection (1)
Non-infected (1)
Normal (1)
Acute myocardial infarction (1)
Bacterial meningitis (1)
Breast cancer (1)
Cryptococcal meningitis (1)
Hyperhomocysteinemia (1)
Liver cancer (1)
Malignant neoplasm of ovary (1)
Melanoma (1)
Meningitis (1)
Retinopathy of prematurity (1)
Systemic lupus erythematosus (1)
Trigeminal neuralgia (1)
Trypanosomiasis (1)
Viral encephalitis (1)

Technology Type

Mass Spectrometry (83)
Shotgun proteomics (60)
Bottom-up proteomics (16)
Data-dependent acquisition (8)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Gel-based experiment (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry assay (1)
Mass spectrometry (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
SRM/MRM (1)

Instrument Platform

Illumina Genome Analyzer IIx (3)
Illumina HiSeq 2500 (3)
Illumina NovaSeq 6000 (2)
Orbitrap Eclipse (2)
Q Exactive Plus (2)
Axon GenePix 4000A scanning hardware (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - negative - reversed-phase-c18 (1)
Liquid Chromatography MS - positive - reversed-phase-c18 (1)
Varian (1)
Bruker (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (51)
2014 (39)
2012 (30)
2015 (28)
2021 (23)
2011 (21)
2025 (20)
2022 (13)
2023 (13)
2024 (12)
2010 (12)
2016 (10)
2026 (8)
2020 (7)
2009 (4)
2018 (3)
2008 (3)
2017 (3)
2007 (1)
2006 (1)

CHEBI ID

CHEBI:17234 (2)
CHEBI:17568 (2)
CHEBI:15891 (2)
CHEBI:16449 (2)
CHEBI:30769 (2)
CHEBI:3490 (1)
CHEBI:6147 (1)
CHEBI:74720 (1)
CHEBI:61293 (1)
CHEBI:518413 (1)
CHEBI:69237 (1)
CHEBI:4222 (1)
CHEBI:81126 (1)
CHEBI:15740 (1)
CHEBI:9587 (1)
CHEBI:8711 (1)
CHEBI:27648 (1)
CHEBI:80727 (1)
CHEBI:191506 (1)
CHEBI:63605 (1)
CHEBI:3510 (1)
CHEBI:70867 (1)
CHEBI:240107 (1)
CHEBI:81223 (1)
CHEBI:78842 (1)
CHEBI:34100 (1)
CHEBI:30779 (1)
CHEBI:188197 (1)
CHEBI:71429 (1)
CHEBI:10023 (1)

Metabolite Name

Thiomorpholine 3-carboxylate (2)
Uracil (2)
Imidazolepropionic acid (2)
Campesterol (2)
Pindolol (2)
Acetylcarnitine (2)
Riboflavin (2)
Stearamide (2)
L-Methionine (2)
Cimicidine (1)
Certonardosterol A2 (1)
Aranochlor B (1)
6-O-Methylhamatinine (1)
Sorbistin C (1)
Hyperidixanthone (1)
Boesenbergin B (1)
Pinnarine (1)
3,4-Dehydrostrictosidinic acid (1)
Incaspitolide A (1)
Lys Tyr Ser (1)
2-O-beta-D-glucopyranosyl 1,4-Dideoxy-1,4-imino-D-arabinitol (1)
21-O-Methyltoosendanpentol (1)
7-Aminocholesterol (1)
14-O-benzoylperegrine (1)
Lassiocarpine (1)
Anthriscifolcine D (1)
Julocrotine (1)
Agelasidine A (1)
Ala Arg Lys (1)
Lys Ile Glu (1)

First Public Date

2023 (1)
2017 (1)

Study type

Transcription profiling by array (144)
RNA-seq of coding RNA (23)
ChIP-seq (15)
Transcription profiling by tiling array (4)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
Proteomic profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Other (1)
RNA-seq of total RNA (1)

Release Date

2022 (187)
2025 (176)
2023 (169)
2021 (148)
2024 (138)
2020 (119)
2019 (90)
2018 (81)
2014 (81)
2013 (75)
2017 (69)
2016 (68)
2015 (64)
2012 (52)
2011 (29)
2010 (26)
2026 (22)
2009 (12)
2008 (11)
2007 (8)
2006 (4)
2005 (3)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Helmholtz-Centre for Environmental Research – UFZ, Department of Molecular Toxicology (4)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Helmholtz-Centre for Environmental Research - UFZ, Department of Molecular Toxicology (2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
Mass Spectrometry Facility, Max Perutz Labs Vienna, University of Vienna, Vienna Biocenter, Dr.-Bohr-Gasse 7, 1030 Vienna (2)
Peking Union Medical College (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
Anesthesiology Department, The First Affiliated Hospital of Ningbo University, Ningbo, China (1)
BK21 Plus KNU Multi-Omics-based Creative Drug Research Team, College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Beijing Academy of Agriculture and Forestry Sciences (1)
Bertis R&D Division, Bertis Inc., Republic of Korea (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Capital Institute of Pediatrics (1)
Capital Institute of Pediatrics-Peking University Teaching Hospital (1)
Center for Cancer Research,Medical University of Vienna,Borschke-Gasse 8a,1090 Vienna (1)
Center for Epigenetics and Metabolism, U1233 INSERM, Department of Biological Chemistry, University of California, Irvine, 92697 California. (1)
Children's Medical Research Insitute (1)
Children's Medical Research Institute, Westmead, Sydney, Australia (1)
Clinical Medical Research Center of Second Clinical Medical College, Jinan University, Shenzhen People's Hospital, No.1017, Dongmen North Road, Luohu District, Shenzhen 518020, China. (1)
Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), Shenzhen, Guangdong;Department of Nephrology, The University of Hong Kong-Shenzhen Hospital, Shenzhen, Guangdong (1)
College of Pharmacy, Anhui University of Chinese Medicine, Hefei 230012, China. (1)
College of Plant Protection, Shandong Agricultural University (1)
Department of Cardiology, Chengdu Third People’s Hospital/Affiliated Hospital of Southwest Jiaotong University, Chengdu, China. (1)
Department of Chemistry and Biomolecular Sciences, University of Ottawa, Canada (1)
Department of Chemistry and Center for ProteoGenome Research, Korea University, Seoul 02841, Republic of Korea (1)
Department of Clinical Laboratory, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China. (1)
Department of Dental Implant Center, Beijing Stomatological Hospital, School of Stomatology, Capital Medical University, Beijing, China (1)
Department of Medical Mycology, Institute of Dermatology, Chinese Academy of Medical Science and Peking Union Medical College; Jiangsu Key Laboratory of Molecular Biology for Skin Diseases and STIs, Nanjing 210042, China (1)
Department of Medicine, McGill University, Montreal, Quebec, Canada (1)

Tags

xref:PubMed:36929631 (1)

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The characteristics of genome-wide DNA methylation in naM-CM-/ve CD4+ T cells of patients with psoriasis and atopic dermatitis

Psoriasis and atopic dermatitis (AD) are characterized by polarized CD4+ T cell responses. During the polarization of naM-CM-/ve CD4+ T cells, DNA methylation plays an important role in the regulation of gene transcription. In this study, we profiled the genome-wide DNA methylation status of naM-CM-...

ORGANISM(S): Homo sapiens

2012-03-17 | E-GEOD-35582 | biostudies-arrayexpress

Effect of ablation of Max gene expression on ES cells cultured under conventional or 2i/Nam condition.

c-Myc is one of key players that are crucially involved in maintaining the undifferentiated state and the self-renewal of ESCs. To understand the mechanism by which c-Myc helps preserve these prominent characteristics of ESCs, we generated null-ES cells for the Max gene, which encodes the best chara...

ORGANISM(S): Mus musculus

2011-07-19 | E-GEOD-27881 | biostudies-arrayexpress

Differentially activated CD8 T cells in liver and gut

NaM-CM-/ve, liver- and gut-activated CD8 OT-I T cells show differential migration behaviour. To analyze which genes could be responsible for different migration patterns, naM-CM-/ve, liver-activated and gut-activated CD8 T cells were isolated and compared for their gene expression profile. Gene expr...

ORGANISM(S): Mus musculus

2014-02-25 | E-GEOD-39449 | biostudies-arrayexpress

Expression data from naM-CM-/ve and MPTP-exposed cholinergic transgenic mice

PD is the second most common neurodegenerative disease worldwide with growing prevalence. MPTP is a neurotoxin which causes the appearance of Parkinson's disease (PD) pathology. The involvement of the cholinergic system in PD has been identified decades ago and anti-cholinergic drugs were upon the...

ORGANISM(S): Mus musculus

2012-01-09 | E-GEOD-31458 | biostudies-arrayexpress

Differential expression of mRNAs in naM-CM-/ve, effector, and memory CD8 T cells of mir-150 KO and wild-type mice

microRNA-150 (miR-150) is mainly expressed in the lymph nodes and spleen and is highly up-regulated during the development of mature T and B cells. To understand the signal-transduction network for 'effector or memory T cells' and 'mir-150' in naM-CM-/ve, effector, or memory CD8 T cells of mir-150 k...

ORGANISM(S): Mus musculus

2014-10-11 | E-GEOD-62262 | biostudies-arrayexpress

Extraction and Purification of R-Phycoerythrin Alpha Subunit from the Marine Red Algae Pyropia Yezoensis and Its Biological Activities.

Not available

S-EPMC8587297 | biostudies-literature

The NLRomes of Zea mays NAM founder lines and Zea Luxurians Display Presence Absence Variation, Integrated Domain Diversity and Mobility

We analyzed the nucleotide-binding leucine-rich repeat receptors (NLRs) of 26 recently sequenced diverse founder lines from the maize nested association mapping (NAM) population and compared them to the R gene complement present in a wild relative of maize, Zea luxurians.

ORGANISM(S): Zea mays

2023-02-28 | GSE206952 | GEO

Advancing systemic toxicity risk assessment: Evaluation of a NAM-based toolbox approach

High throughput transcriptomics using the TempO-Seq (TM) platform for dose response modelling of 3 different cell lines treated with multiple compounds as part of a study to generate a toolbox and workflow for non-animal safety assessments. The data generated here was produced as one part of a toolb...

ORGANISM(S): Homo sapiens

2025-09-15 | E-MTAB-15266 | biostudies-arrayexpress

A multicentre molecular analysis of hepatitis B and blood-borne virus coinfections in Viet Nam.

Not available

S-EPMC3374772 | biostudies-literature

Expression analysis of resting and stimulated naM-CM-/ve and MP CD8 T cells

Memory T cells respond to stimulation with more rapid expression of effector cell functions than their naM-CM-/ve counterparts, yet the gene expression signature underlying this enhanced recall response is not known. Therefore, we performed comprehensive, whole-genome expression profiling of murine ...

ORGANISM(S): Mus musculus

2012-05-10 | E-GEOD-16145 | biostudies-arrayexpress

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