Nano-protein interaction

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Proteomics (871)
Unknown (236)
Transcriptomics (31)
Genomics (13)
Other (2)
Metabolomics (1)

Organisms

Allexis (837)
Arabidopsis thaliana (837)
Bos taurus (837)
Callinectes sapidus (837)
Drosophila melanogaster (837)
Entamoeba histolytica (837)
Entamoeba histolytica HM-1:IMSS-A (837)
Escherichia coli (837)
Homo sapiens (837)
Leishmania major strain Friedlin (837)
Listeria monocytogenes (837)
Medicago truncatula (837)
Meleagris gallopavo (837)
Methylohalobius crimeensis 10Ki (837)
Mus musculus (837)
Mus musculus (14)
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Drosophila melanogaster (3)
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Arabidopsis thaliana (2)
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Organisms

Mus musculus (3)
Homo sapiens (3)
Rattus norvegicus (2)
Human adenovirus 7 (1)

Repository

pride (838)
biostudies-arrayexpress (33)
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geo (3)
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Tissue

Cell culture (198)
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Disease

Disease free (23)
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Viral infectious disease (3)
Not Available (2)
Autism spectrum disorder (2)
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Liver cancer (2)
Lung cancer (2)
Pancreatitis (2)
Prostate adenocarcinoma (2)
Apparently healthy (1)

Technology Type

Mass Spectrometry (838)
Shotgun proteomics (415)
Affinity purification coupled with mass spectrometry proteomics (190)
Bottom-up proteomics (126)
Data-dependent acquisition (74)
Gel-based experiment (64)
Chemical cross-linking coupled with mass spectrometry proteomics (42)
Data-independent acquisition (28)
Top-down proteomics (23)
SWATH MS (17)
All-ion fragmentation (10)
SRM/MRM (7)
HDMSE (6)
MSE (6)
Affinity proteomics (3)
DiaPASEF (3)
Mass spectrometry assay (1)
Mass spectrometry imaging (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 4000 (4)
Q Exactive (3)
Illumina NovaSeq 6000 (2)
Instrument (2)
LTQ (2)
MouseWG-6_V2_0_R3_11278593_A (1)
NextSeq 500 (1)
4000 QTRAP (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
LTQ XL (1)
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Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Orbitrap Mass Spectrometer (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
Thermo Scientific LTQ (1)

Publication Date

2022 (125)
2025 (111)
2023 (106)
2021 (105)
2024 (103)
2026 (77)
2020 (61)
2019 (59)
2018 (47)
2017 (40)
2016 (22)
2015 (21)
2014 (13)
2013 (4)
2010 (4)
2012 (3)
2009 (2)
2007 (2)

UNIPROT ID/AC

A5ACR7_VITVI (5)
A5ADJ5_VITVI (5)
A5ADV7_VITVI (5)
A5AE63_VITVI (5)
A5AEB4_VITVI (5)
A5AEH1_VITVI (5)
A5AEI0_VITVI (5)
A5AFH3_VITVI (5)
A5AFX4_VITVI (5)
A5AGD5_VITVI (5)
A5AGN5_VITVI (5)
A5AHJ5_VITVI (5)
A5AHY0_VITVI (5)
A5AJ83_VITVI (5)
A5AJY2_VITVI (5)
A5AKD8_VITVI (5)
A5AL04_VITVI (5)
A5ALB2_VITVI (5)
A5ALT5_VITVI (5)
A5ALV6_VITVI (5)
A5AML5_VITVI (5)
A5ANR7_VITVI (5)
A5ANX3_VITVI (5)
A5AP38_VITVI (5)
A5APB9_VITVI (5)
A5APR3_VITVI (5)
A5AQ47_VITVI (5)
A5AQ65_VITVI (5)
A5AQ89_VITVI (5)
A5AR17_VITVI (5)

Metabolite Name

(3R,4R)-3-Amino-1-hydroxy-4-methylpyrrolidin-2-one (1)
QUINALPHOS (1)
Thr Phe Leu Thr Gln (1)
4-Quinolinecarboxylic Acid (1)
Seglitide (1)
(S)-7-(3-Amino-1-pyrrolidinyl)-1-cyclopropyl-6-fluoro-1,4-dihydro-4-oxo-1,8-naphthyridine-3-carboxylic acid (1)
N-[1-(furan-2-carbonyl)-3,4-dihydro-2H-quinolin-7-yl]-2-phenoxyacetamide (1)
(4-methoxy-1-oxa-9-azaspiro[5.5]undecan-9-yl)-(3-methylthiophen-2-yl)methanone (1)
Dihydroxytryptamine (1)
Chroman-2-ol (1)
(8R,9S,13S,14S)-3-Hydroxy-13-methyl-4,6,7,8,9,11,12,14,15,16-decahydro-3H-cyclopenta[a]phenanthren-17-one (1)
Allyl alcohol (1)
Pro Val (1)
TAUROCHOLIC ACID (1)
Gly Val Lys (1)
2-Phenylimidazo[1,2-a]pyridine (1)
4-Amino-3-phenylbutanoic acid (1)
Pentamethylchromanol (1)
DESACETYLCOLFORSIN (1)
(+)-Abscisic Acid (1)
Indolelactic Acid (1)
Delta-Valerolactone (1)
V-Pyrro/NO (1)
Iguratimod (1)
Lys Gly (1)
Rabeprazole (1)
Polyribophosphate (1)
4-Oxododecanedioic acid (1)
D-myo-inositol (1,2,6) trisphosphate (1)
Sec-Butylamine (1)

First Public Date

2025 (4)
2014 (2)
2024 (1)
2023 (1)
2022 (1)
2019 (1)

Classification

viruses (1)

Modification

15.994915 (4)
-17.026549 (3)
-18.010565 (3)
57.021464 (3)
2x(15)N labeled L-lysine (2)
42.010565 (2)
4x(15)N labeled L-arginine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(2)H labeled dimethylated residue (1)
79.966331 (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (7)
ChIP-seq (3)
Proteomic profiling by mass spectrometer (1)
ChIP-chip by array (1)
RIP-seq (1)
Proteomic profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (28)
2024 (26)
2023 (25)
2021 (24)
2020 (24)
2015 (20)
2019 (19)
2025 (18)
2017 (14)
2018 (13)
2016 (10)
2014 (10)
2013 (10)
2012 (7)
2026 (5)
2010 (5)
2009 (5)
2007 (3)
2011 (1)
2006 (1)
2005 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
Head of Proteomics (4)
Mendel University in Brno (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Department of Immunobiology, University of Lausanne, Epalinges, Switzerland (3)
Department of Pharmaceutical Chemistry and Bioanalytics Institute of Pharmacy Martin Luther University Halle-Wittenberg Halle (Saale), Germany (3)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Stowers Institute for Medical Research (3)
USDA-ARS (3)
Univ. Bordeaux, Bordeaux Proteome, Bordeaux, France. (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany (2)
Biotechnology Research Center, The University of Tokyo, Tokyo, Japan. (2)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
Chromosome dynamics and genome stability, Institute of Epigenetics and Stem Cells, Helmholtz Zentrum München, Feodor-Lynen-Strasse 21, 81377 München, Germany (2)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (2)
Department of Molecular Pathology, Faculty of Military Health Sciences, University of Defense, Hradec Kralove, Czech Republic (2)
Diabetes and Circadian Rhythms Department, Nestlé Institute of Health Sciences, CH-1015 Lausanne, Switzerland (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Forschungszentrum Juelich GmbH ZEA-3 Analytics (2)
Forschungszentrum Jülich ZEA-3 Analytics (2)
Functional Genomics, University Medicine Greifswald, Germany (2)
ICM, Molecular Evolution, Uppsala University (2)
Institute for Genetics and Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, 50931, Germany (2)
Institute for Genetics, University of Cologne, 50674 Cologne, Germany (2)
Institute for Genomics, Biocomputing and Biotechnology Mississippi State University (2)
Jacqui Wood Cancer Centre, Medical Research Institute, Ninewells Hospital and Medical School, University of Dundee, James Arrott Drive, Dundee DD1 9SY, Scotland (2)

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Promiscuity in Polyphenol-Protein Interactions-Monitoring Protein Conformational Change upon Polyphenol-Protein Binding by Nano-Differential Fluorimetry (Nano-DSF).

Not available

S-EPMC11858516 | biostudies-literature

Revising Protein Corona Characterization and Combining ITC and Nano-DSC to Understand the Interaction of Proteins With Porous Nanoparticles.

Not available

S-EPMC8542777 | biostudies-literature

Interlayer water regulates the bio-nano interface of a β-sheet protein stacking on graphene.

Not available

S-EPMC4650828 | biostudies-literature

Nano-sandwich composite by kinetic trapping assembly from protein and nucleic acid.

Not available

S-EPMC8464029 | biostudies-literature

Curcumin-Induced Stabilization of Protein-Based Nano-Delivery Vehicles Reduces Disruption of Zwitterionic Giant Unilamellar Vesicles.

Not available

S-EPMC8956123 | biostudies-literature

Effects of atomic-level nano-structured hydroxyapatite on adsorption of bone morphogenetic protein-7 and its derived peptide by computer simulation.

Not available

S-EPMC5680243 | biostudies-literature

New Paradigm for Nano-Bio Interactions: Multimolecular Assembly of a Prototypical Disordered Protein with Ultrasmall Nanoparticles.

Not available

S-EPMC9706667 | biostudies-literature

A tetrameric protein scaffold as a nano-carrier of antitumor peptides for cancer therapy.

Not available

S-EPMC6441627 | biostudies-literature

Voltage controlled shutter regulates channel size and motion direction of protein aperture as durable nano-electric rectifier-----An opinion in biomimetic nanoaperture.

Not available

S-EPMC9766157 | biostudies-literature

proteomics identification of total cellular proteins after five types of nanocarbon incubations with macrophages

Single-walled-carbon-nanohorns (SNH) exhibit huge application prospects. Notably, spherical SNH possess different morphology from conventional carbon nanotubes (CNT). However, there is a tremendous lack of studies on the nanotoxicity and mechanism of SNH, and their comparison with nanotubes. Here, t...

ORGANISM(S): Mus musculus (Mouse)

2018-06-25 | PXD009635 | Pride

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1154 Results

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Organisms

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