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TranscriptomicsNanopore native RNA-seq for genome-wide identification of transcription units and transcriptional termination sites in the phytopathogen Dickeya dadantii 3937
In this study, based on Nanopore direct RNA-seq where native RNAs are sequenced directly as near full-length transcripts in the 3' to 5' direction, transcription units of the phytopathogen Dickeya dadantii 3937 were validated and transcriptional termination sites were determined. Briefly, D. dadanti...
ORGANISM(S): Dickeya dadantii 3937 
2022-01-01 | E-MTAB-10482 | biostudies-arrayexpress
GenomicsGenomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line
Whole genome IVT Nanopore DRS
PRJEB102644 | ENA
GenomicsUniversal RNA Linearization Enables Full-length Nanopore DRS Across Whole Transcriptomes
Nanopore sequencing data for "Universal RNA Linearization Enables Full-length Nanopore DRS Across Whole Transcriptomes" paper
PRJEB77080 | ENA
GenomicsNative RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications located in the A and P sites (NSUN5 KO DRS samples)
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications located in the A and P sites (NSUN5 KO DRS samples)
PRJEB78295 | ENA
GenomicsNanopore DRS of Trypanosoma brucei
Nanopore-based direct RNA sequencing of the Trypanosoma brucei transcriptome
PRJEB60364 | ENA
ProteomicsmRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation
Pseudouridine (psi) is one of the most abundant human mRNA modifications generated via psi synthases, including TRUB1 and PUS7. Nanopore direct RNA sequencing combined with our recent tool, Mod-p ID, enables psi mapping, transcriptome-wide, without chemical derivatization of the input RNA and/or con...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-08-20 | MSV000095655 | MassIVE
ProteomicsmRNA psi profiling using nanopore DRS reveals cell type-specific pseudouridylation
Pseudouridine (psi) is one of the most abundant human mRNA modifications generated via psi synthases, including TRUB1 and PUS7. Nanopore direct RNA sequencing combined with our recent tool, Mod-p ID, enables psi mapping, transcriptome-wide, without chemical derivatization of the input RNA and/or con...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-08-22 | MSV000095673 | MassIVE
Genomics
Nanopore DRS for bovine testis transcriptome
PRJNA831889 | ENA
Genomics
Nanopore DRS for bovine mastitis transcriptome
PRJNA911329 | ENA
GenomicsSignificant and pervasive effects of RNA degradation on Nanopore direct RNA sequencing
Abstract Oxford Nanopore direct RNA sequencing (DRS) is capable of sequencing complete RNA molecules and accurately measuring gene and isoform expression. However, as DRS is designed to profile intact RNA, expression quantification may be more heavily dependent upon RNA integrity than alternate RNA...
EGAS00001006542 | EGA
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