Nascent chain - OmicsDI

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Homo sapiens (30)
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UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
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A0A087WUD1 (3)
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A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:62013 (1)
CHEBI:182915 (1)
CHEBI:133695 (1)
CHEBI:190990 (1)
CHEBI:166490 (1)
CHEBI:41189 (1)
CHEBI:86047 (1)
CHEBI:133747 (1)
CHEBI:141006 (1)
CHEBI:33885 (1)
CHEBI:37156 (1)
CHEBI:41183 (1)
CHEBI:17721 (1)
CHEBI:42600 (1)
CHEBI:44383 (1)
CHEBI:37655 (1)
CHEBI:133179 (1)
CHEBI:32159 (1)
CHEBI:37714 (1)
CHEBI:18040 (1)
CHEBI:32321 (1)
CHEBI:30779 (1)
CHEBI:17535 (1)
CHEBI:188102 (1)
CHEBI:53455 (1)
CHEBI:61302 (1)
CHEBI:39066 (1)
CHEBI:52330 (1)
CHEBI:58275 (1)
CHEBI:28664 (1)

Metabolite Name

Vanilloylglycine (1)
Geranyllinalool (1)
2-hydroxylignocerate* (1)
Deoxycholic acid 3-sulfate (1)
Lactodifucotetraose (1)
3-methylurate* (1)
6-sialyl-N-acetyllactosamine (1)
3-fucosyllactose (1)
Fucitol (1)
N2,N2-dimethylguanine (1)
Sucralose (1)
1,4-butanediol (1)
Methylurea (1)
1,3-propanediol (1)
Digalacturonic acid (1)
Estriol (1)
Clarithromycin (1)
Nervonic acid (1)
Lignoceric acid (1)
Arachidic acid (1)
7-ketocholesterol (1)
Ursocholate (1)
Tyrosol (1)
P-hydroxybenzaldehyde (1)
Galacturonate (1)
Erythrose (1)
Cholate sulfate (1)
Alpha-tocopherol acetate (1)
7-ketolithocholate (1)
7-methylurate (1)

First Public Date

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Classification

bacteria (11)
viruses (1)

Study type

Transcription profiling by array (107)
RNA-seq of coding RNA (100)
ChIP-seq (60)
Other (32)
RNA-seq of non coding RNA (12)
ChIP-chip by tiling array (10)
GRO-seq (6)
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Unknown experiment type (2)
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Comparative genomic hybridization by array (2)
RIP-seq (2)
RNA-seq of coding RNA from single cells (2)
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RNA-seq of total RNA (2)
PRO-seq (1)
RNAi profiling by array (1)
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ATAC-seq (1)
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Release Date

2014 (80)
2015 (79)
2013 (77)
2016 (71)
2021 (55)
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2012 (50)
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2011 (44)
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2005 (10)
2007 (6)
2002 (4)
2004 (3)
2003 (3)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

LMU Munich Plant Biochemistry and Physiology, Germany (7)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (4)
Protein Biogenesis Laboratory, Francis Crick Institute, London, UK (4)
The Francis Crick Institute (2)
Universitätsklinikum Frankfurt am Main, Institut für Biochemie II (2)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way Cambridge CB2 0RE UK (1)
Cancer Research UK- Cambridge Institute Li Ka Shing Centre Robinson way Cambridge CB2 0RE UK (1)
Cell Biology, Harvard Medical School (1)
Centre Médical Universitaire, University of Geneva (1)
Chair for Biochemistry University Rostock formerly Chair for Biochemistry of Plants, Ruhr-University Bochum (1)
Cleveland Clinic (1)
Department of Biochemistry University of Oxford South Parks Road Oxford OX1 3QU The United Kingdom. (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville Victoria 3052, Australia (1)
Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53726, United States of America (1)
Department of Biology, Concordia University, Montreal, Quebec, Canada (1)
Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry, Durham University, Durham, UK (1)
Department of Internal Medicine V, Heidelberg University Hospital, 69120 Heidelberg, Germany (1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Department of human molecular genetics and biochemistry, Sackler faculty of medicine, Tel Aviv University, Israel. (1)
Faculty of Biology, Technion – Israel Institute of Technology Haifa 32000, Israel (1)
German Cancer Research Center (1)
Group leader, Protein Biogenesis Laboratory Francis Crick Institute 1 Midland Road London NW1 1AT (1)
Harvard University MCB Department (1)
Head of Proteomics, Dept of Immunology, University of Oslo and Oslo University Hospital (1)
Integrative Proteomics and Metabolomics, Berlin Institute for Medical Systems Biology at the Max-Delbrück Center for Molecular Medicine in the Helmholtz Association, Hannoversche Str. 28, 10115 Berlin, Germany (1)
Johns Hopkins School of Medicine Department of Biological Chemistry Woods Basic Science Building Room 517 725 N. Wolfe St. Baltimore, MD 21205, USA (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (1)

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Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation [Nascent-Seq]

Over the past decade, genome-wide assays have underscored the broad sweep of circadian gene expression. A substantial fraction of the transcriptome undergoes oscillations in many organisms and tissues, which governs the many biochemical, physiological and behavioral functions under circadian control...

ORGANISM(S): Mus musculus

2012-11-10 | E-GEOD-36872 | biostudies-arrayexpress

Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation [StrandSpe_NascentSeq]

ORGANISM(S): Mus musculus

2012-11-10 | E-GEOD-36873 | biostudies-arrayexpress

Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation

This SuperSeries is composed of the following subset Series: GSE36871: Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation [RNA-Seq] GSE36872: Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation [Nascent-Seq] GSE36873: Nascent-Seq Reveals Nov...

ORGANISM(S): Mus musculus

2012-11-09 | E-GEOD-36916 | biostudies-arrayexpress

Nascent-Seq Reveals Novel Features of Mouse Circadian Transcriptional Regulation [ChIP-seq]

ORGANISM(S): Mus musculus

2012-11-10 | E-GEOD-36874 | biostudies-arrayexpress

Nascent chain interactions of proximal ribosomes drive homo-oligomer assembly

PRJNA637897 | ENA

STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins

Chloroplast-encoded multi-span thylakoid membrane proteins are crucial for photosynthetic complexes, yet the coordination of their biogenesis remains poorly understood. To identify factors that specifically support the cotranslational biogenesis of the reaction center protein D1 of photosystem (PS) ...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2024-08-28 | PXD042896 | Pride

Nascent-Seq Indicates Widespread Cotranscriptional pre-mRNA Splicing in Drosophila

To determine the prevalence of cotranscriptional splicing in Drosophila, we sequenced nascent RNA transcripts from Drosophila S2 cells as well as from Drosophila heads. 87% of introns assayed manifest more than 50% cotranscriptional splicing. The remaining 13% are cotranscriptionally spliced poorly,...

ORGANISM(S): Drosophila melanogaster

2011-12-01 | E-GEOD-32950 | biostudies-arrayexpress

Defining the specificity of cotranslationally acting chaperones by systematic analysis of mRNAs associated with ribosome-nascent chain complexes.

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Saccharomyces cerevisiae

2013-04-05 | E-GEOD-45798 | biostudies-arrayexpress

Nascent chain misfolding slows translation and stimulates co-translational mRNA decay

PRJNA1227984 | ENA

Nascent chain dynamics and ribosome interactions within folded ribosome-nascent chain complexes observed by NMR spectroscopy.

Not available

S-EPMC8513902 | biostudies-literature

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