Nayak P P - OmicsDI

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Unknown (868)
Transcriptomics (22)
Proteomics (9)
Metabolomics (6)
Models (3)
Other (2)
Genomic (1)
Genomics (1)

Organisms

Homo sapiens (17)
Streptococcus thermophilus LMD-9 (8)
Neoseiulus barkeri (8)
Synechococcus sp. CC9311 (8)
Vibrio parahaemolyticus RIMD 2210633 (8)
Aspergillus niger NRRL3 (8)
Acipenser baerii (8)
NEWT:381198 (8)
SARS coronavirus Sin3765V (8)
Megalopygidae sp. BOLD:AAA3544 (8)
Polaribacter sp. Q13 (8)
Pseudomonas syringae pv. tomato (8)
Tenacibaculum dicentrarchi (8)
Burkholderia sp. H5.7(2011) (8)
Ornithodoros sp. AJM-2011b (8)
Papio anubis anubis (8)
Capra (8)
Lutjanidae (8)
Serranidae (8)
Labridae (8)
Penaeus (8)
Phasianidae sp. (8)
Human alphaherpesvirus 3 (8)
Mesotaenium endlicherianum (8)
Robinia pseudoacacia (8)
Zygnema circumcarinatum (8)
Nostoc punctiforme PCC 73102 (8)
Mus musculus (4)
Macaca mulatta (1)
Bacillus subtilis (1)

Organisms

soil metagenome (1)

Repository

biostudies-arrayexpress (22)
pride (8)
MetaboLights (4)
BioModels (3)
MassIVE (3)
GNPS (2)
dbGaP (1)
ENA (1)

Tissue

Bone marrow (2)
Sclerotium (1)
C2C12 cell (1)
Umbilical cord (1)
Larva (1)
Conidium (1)
Mycelium (1)
Skeletal muscle myoblast (1)
Fungal cell (1)
Erythrocyte (1)
Urine (1)
Blood cell (1)
Stem cell (1)
Cell culture (1)

Disease

Blood coagulation disease (1)
Bladder urachal urothelial carcinoma (1)
Graft-versus-host disease (1)
Cachexia (1)
Malaria (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (8)
Mass spectrometry (4)
Shotgun proteomics (4)
Bottom-up proteomics (2)
Gel-based experiment (1)
Data-dependent acquisition (1)

Instrument Platform

API 4000 (4)
TSQ Quantum Ultra (4)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
NextSeq 500 (1)
Q Exactive Plus (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)

Publication Date

2017 (7)
2019 (3)
2018 (3)
2014 (3)
2013 (3)
2010 (3)
2021 (3)
2022 (3)
2024 (2)
2025 (2)
2020 (2)
2016 (1)
2015 (1)
2012 (1)
2011 (1)
2009 (1)
2007 (1)
2023 (1)
2026 (1)

CHEBI ID

CHEBI:17847 (2)
CHEBI:17111 (2)
CHEBI:15882 (2)
CHEBI:44920 (2)
CHEBI:15760 (2)
CHEBI:18385 (2)
CHEBI:18237 (2)
CHEBI:185033 (1)
CHEBI:185082 (1)
CHEBI:184433 (1)
CHEBI:185588 (1)
CHEBI:185586 (1)
CHEBI:185161 (1)
CHEBI:185584 (1)
CHEBI:184906 (1)
CHEBI:185183 (1)
CHEBI:185582 (1)
CHEBI:185580 (1)
CHEBI:184474 (1)
CHEBI:184829 (1)
CHEBI:185175 (1)
CHEBI:184782 (1)
CHEBI:185578 (1)
CHEBI:184420 (1)
CHEBI:185576 (1)
CHEBI:184776 (1)
CHEBI:184405 (1)
CHEBI:185575 (1)
CHEBI:185573 (1)
CHEBI:185571 (1)

Metabolite Name

2-[3-Carboxy-3-(methylammonio)propyl]-L-histidine (2)
PS(DIME(11,5)/MONOME(13,5)) (1)
4,4,10-Trimethyl-1,11-bis(3-methylbut-2-en-1-yl)-10-(4-methylpent-3-en-1-yl)-9-(2-methylpropanoyl)-3-oxatricyclo[7.3.1.0²,⁷]trideca-2(7),5-diene-8,13-dione (1)
2-{[3,4-dihydroxy-5,6-bis({[(2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoyl]oxy})oxan-2-yl]methoxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
{2-[(7Z,10Z,13Z,16Z)-docosa-7,10,13,16-tetraenoyloxy]-3-(tetracosanoyloxy)propoxy}[2-(methylamino)ethoxy]phosphinic acid (1)
TG(20:1(11Z)/22:2(13Z,16Z)/20:2(11Z,14Z)) (1)
1-(8-{[6-({[3,5-dihydroxy-6-(hydroxymethyl)-4-{[3,4,5-trihydroxy-6-({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxan-2-yl]oxy}methyl)-3,4,5-trihydroxyoxan-2-yl]oxy}-1-hydroxy-6-methoxy-3-methylnaphthalen-2-yl)ethan-1-one (1)
2-amino-4-({1-[(carboxymethyl)-C-hydroxycarbonimidoyl]-2-({[3-(methylsulfanyl)propyl]thio(carbonoimidyl)}sulfanyl)ethyl}-C-hydroxycarbonimidoyl)butanoic acid (1)
(2E)-N-{2-[5,5'-dihydroxy-3'-(2-{[(2E)-1-hydroxy-3-(4-hydroxy-3-methoxyphenyl)prop-2-en-1-ylidene]amino}ethyl)-1H,1'H-[4,4'-biindole]-3-yl]ethyl}-3-(4-hydroxyphenyl)prop-2-enimidic acid (1)
(2R,3R)-2-(3,4-Dihydroxyphenyl)-6-[(2R,3R,4S)-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-3-(3,4,5-trihydroxybenzoyloxy)-3,4-dihydro-2H-1-benzopyran-4-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
2-(Hydroxymethyl)-6-[(3,4,5-trihydroxy-6-{[16-hydroxy-2,6,6,10,11-pentamethyl-14-(6-methyl-2-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}hept-5-en-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}oxan-2-yl)methoxy]oxane-3,4,5-triol (1)
6-(16'-{[3,4-dihydroxy-6-(hydroxymethyl)-5-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-15'-oloxy)-3,4,5-trihydroxyoxane-2-carboxylic acid (1)
3-[({2-[(3-{[4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-1,2-dihydroxy-3,3-dimethylbutylidene]amino}-1-hydroxypropylidene)amino]ethyl}sulfanyl)carbonyl]-4-hydroxy-4-phenylbutanoic acid (1)
4-({[({[5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-N-[2-({2-[(11E)-icos-11-enoylsulfanyl]ethyl}-C-hydroxycarbonimidoyl)ethyl]-3,3-dimethylbutanimidic acid (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
Ps(14:1(9z)/20:5(5z,8z,11z,14z,17z)) (1)
2-[6'-(5,7-Dihydroxy-4-oxo-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4H-chromen-2-yl)-2',3',4,4',5,6-hexahydroxy-[1,1'-biphenyl]-2-yl]-5,7-dihydroxy-3,4-dihydro-2H-1-benzopyran-3-yl 3,4,5-trihydroxybenzoate (1)
Heptacosane-6,8-dione (1)
3,4,5-trihydroxy-6-{[5-hydroxy-14-(1-hydroxy-6-methylhept-5-en-2-yl)-2,11,15-trimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-1(10)-en-8-yl]oxy}oxane-2-carboxylic acid (1)
2-[(7-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-5-hydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl)oxy]-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl (2E)-3-(4-hydroxy-3,5-dimethoxyphenyl)prop-2-enoate (1)
2-[2-({7-[(3-carboxy-3-{2-[(6-carboxy-3,4,5-trihydroxyoxan-2-yl)oxy]-2-oxoethyl}propanoyl)oxy]-11,16,18-trihydroxy-19-[(1-hydroxyethylidene)amino]-5,9-dimethylicosan-6-yl}oxy)-2-oxoethyl]butanedioic acid (1)
(6-{4-[2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-3,5,7-trihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-8-yl}-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
[6,7,8,11,12,13,23-heptahydroxy-3,16-dioxo-21-(3,4,5-trihydroxybenzoyloxy)-2,17,20-trioxatetracyclo[17.3.1.0⁴,⁹.0¹⁰,¹⁵]tricosa-4,6,8,10,12,14-hexaen-22-yl]oxidanesulfonic acid (1)
N-Isobutyl-2E,4Z-octadecadienoyl amine (1)
PA(O-16:0/18:0) (1)
(4,5-dihydroxy-2-{[(1E)-3-hydroxy-3-methyl-1-[(sulfooxy)imino]pentyl]sulfanyl}-6-(hydroxymethyl)oxan-3-yl)oxidanesulfonic acid (1)
{[(2R,3R,5R)-3,4-dihydroxy-5-(2-hydroxy-4-imino-1,4-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}({hydroxy[(2R)-3-[(14-methylpentadecanoyl)oxy]-2-[(9Z,11Z)-octadeca-9,11-dienoyloxy]propoxy]phosphoryl}oxy)phosphinic acid (1)
{4-[2-(3,5-dihydroxyphenyl)-3,5,7-trihydroxy-3,4-dihydro-2H-1-benzopyran-8-yl]-5,7-dihydroxy-2-(3-hydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-3-yl}oxidanesulfonic acid (1)
(2S,15R)-14-(5-ethyl-6-methylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-7-ylium-5-olate (1)
[(2S,15R)-14-{4-[(carboxymethyl)-C-hydroxycarbonimidoyl]butan-2-yl}-2,15-dimethyl-5-(sulfooxy)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-9-yl]oxidanyl (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

First Public Date

2016 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (5)
Methylation profiling by array (4)
Ribo-seq (1)
Other (1)

Release Date

2025 (118)
2022 (112)
2024 (109)
2021 (106)
2020 (83)
2023 (83)
2018 (41)
2019 (39)
2017 (33)
2014 (28)
2016 (25)
2026 (23)
2013 (19)
2015 (18)
2012 (18)
2011 (12)
2010 (12)
2009 (3)
2007 (3)
2008 (2)
2004 (1)
2000 (1)
1997 (1)

Lab affiliation

USDA-ARS Crop Protection and Management Research Unit Tifton, GA 31794 (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)
Core Facility Proteomics Hannover Medical School Carl-Neuberg-Str. 1 30625 Hannover Germany (1)
KIIT Deemed to be University (1)
Group Leader, Vector Borne Diseases International Centre for Genetic Engineering and Biotechnology Aruna Asaf Ali Marg 110067 New Delhi, India (1)
UT Health San Antonio (1)
All India Institute of Medical Sciences, New Delhi, India (1)
Emory University (1)

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Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers

Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers Note: The SBML model is generated from SimBiology. The SimBiology (.sbproj) file is available for download from the curation tab. This model is des...

2024-09-02 | BIOMD0000000611 | BioModels

Identification of full length, splicing and cleavage products of SufB protein of SUF-complex of Mycobacterium tuberculosis

SufB, an Fe-S cluster assembly protein is critical for mycobacterial survival and virulence; but as a protein still at its nascent stage. SufB is interrupted by an intein sequence, which excises itself out from the full length protein post-translationally. Intein splicing is crucial for the activati...

ORGANISM(S): Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis

2022-02-15 | PXD015199 | Pride

P-Rex2 exhibits unique structural features and regulatory mechanisms distinct from the closely related RhoGEF P-Rex1.

Not available

S-EPMC12803288 | biostudies-literature

Klf5 controls bone marrow homing of stem cells and progenitors through Rab5-mediated membrane Beta1/Beta2-integrin expression

The Kruppel-like factor 5 (Klf5) regulates pluripotent stem cell self-renewal but its role in somatic stem cells is unknown. Klf5 deficient hematopoietic stem cells and progenitors (HSC/P) fail to engraft after transplantation. This HSC/P defect was associated with impaired bone marrow (BM) homing a...

ORGANISM(S): Mus musculus

2013-01-30 | E-GEOD-43806 | biostudies-arrayexpress

Methyl 2,6-diphenyl-1-p-tolyl-4-(p-tolyl-amino)-1,2,5,6-tetra-hydro-pyridine-3-carboxyl-ate.

Not available

S-EPMC3414317 | biostudies-literature

Isolation, characterization and screening of phosphate (P) solubilizing actinomycetes and exploring its potency in finger millet (Eleusine coracana L.).

Not available

S-EPMC11924867 | biostudies-literature

Leukocyte adhesion to P-selectin and the inhibitory role of Crizanlizumab in sickle cell disease: A standardized microfluidic assessment.

Not available

S-EPMC7246173 | biostudies-literature

CuO/TiO₂/ZnO NPs Anchored Hydrogen Exfoliated Graphene: To Comprehend the Role of Graphene in Catalytic Reduction of p-Nitrophenol.