Nayak S S - OmicsDI

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Unknown (1229)
Transcriptomics (25)
Proteomics (17)
Metabolomics (5)
Models (2)
Other (2)
Genomic (1)
Genomics (1)

Organisms

Homo sapiens (27)
Mus musculus (4)
Macaca mulatta (3)
Plasmodium cynomolgi strain B (2)
Bacillus subtilis (1)
Aedes albopictus (1)
Aspergillus flavus (1)
Bungarus caeruleus (1)
Mycobacterium tuberculosis (1)
Mycobacterium tuberculosis H37Rv (1)
Oryza sativa (1)
Synechococcus elongatus (1)

Organisms

soil metagenome (1)

Repository

biostudies-arrayexpress (25)
pride (14)
MassIVE (5)
MetaboLights (4)
BioModels (2)
dbGaP (1)
GNPS (1)
ENA (1)

Tissue

Erythrocyte (2)
Blood cell (1)
Bone marrow (1)
Cell culture (1)
Conidium (1)
Epithelial cell (1)
Fungal cell (1)
Larva (1)
Leaf (1)
Mycelium (1)
Nasal mucosa (1)
Pancreatic islet (1)
Photosynthetic cell (1)
Sclerotium (1)
Stem cell (1)
Type B pancreatic cell (1)
Umbilical cord (1)
Urine (1)
Venom gland (1)

Disease

Malaria (2)
Blood coagulation disease (1)
Acute leukemia (1)
Bladder urachal urothelial carcinoma (1)
COVID-19 (1)
Graft-versus-host disease (1)
Insulinoma (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (10)
Mass spectrometry (4)
Bottom-up proteomics (3)
Gel-based experiment (1)

Instrument Platform

API 4000 (3)
TSQ Quantum Ultra (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
MACS (1)
NextSeq 500 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2017 (6)
2021 (5)
2022 (4)
2019 (4)
2024 (3)
2018 (3)
2020 (3)
2015 (3)
2014 (3)
2013 (3)
2010 (3)
2025 (2)
2007 (2)
2023 (2)
2016 (1)
2011 (1)
2009 (1)
2008 (1)
2026 (1)

CHEBI ID

CHEBI:15760 (2)
CHEBI:15882 (2)
CHEBI:17111 (2)
CHEBI:17847 (2)
CHEBI:18237 (2)
CHEBI:18385 (2)
CHEBI:44920 (2)
CHEBI:10049 (1)
CHEBI:10093 (1)
CHEBI:101085 (1)
CHEBI:109895 (1)
CHEBI:1109 (1)
CHEBI:12387 (1)
CHEBI:124991 (1)
CHEBI:125535 (1)
CHEBI:131887 (1)
CHEBI:131924 (1)
CHEBI:132244 (1)
CHEBI:132448 (1)
CHEBI:132883 (1)
CHEBI:133026 (1)
CHEBI:133057 (1)
CHEBI:133094 (1)
CHEBI:133657 (1)
CHEBI:133662 (1)
CHEBI:133756 (1)
CHEBI:133758 (1)
CHEBI:133842 (1)
CHEBI:134092 (1)
CHEBI:134281 (1)

Metabolite Name

2-[3-Carboxy-3-(methylammonio)propyl]-L-histidine (2)
((Imino(methoxy)methyl)amino)(diphenoxy)phosphine oxide (1)
(1'S,2R,2'R,10'S,11'S,15'S)-17'-hydroxy-2',15'-dimethylspiro[oxolane-2,14'-tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane]-6',8'-diene-5,5'-dione (1)
(1-{1-[(4-hydroxy-3-methoxyphenyl)methyl]-7,8-dimethoxy-2,2-dimethyl-1,2,3,4-tetrahydro-2λ⁵-isoquinolin-2-yl}ethylidene)-λ⁴-oxidanyliumyl (1)
(10,14a-dihydroxy-2,2,4a,6a,6b,9,9,12a-octamethyl-docosahydropicen-13-yl)oxidanesulfonic acid (1)
(10S,14S)-10,14,20-trimethyl-16-methylidene-22-azahexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²³.0¹⁷,²²]tetracosan-5-ylium-7-olate (1)
(12aR)-4-(dimethylamino)-4a,5,10,12a-tetrahydroxy-6-methylidene-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aR)-7-chloro-4-(dimethylamino)-4,6,10,12a-tetrahydroxy-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-1,3,11,12-tetrone (1)
(12aS)-4,7-bis(dimethylamino)-10,12,12a-trihydroxy-1,3,11-trioxo-9-(2-oxoacetamido)-1,2,3,4,4a,5,5a,6,11,11a,12,12a-dodecahydrotetracene-2-carboximidic acid (1)
(12aS)-9-{[2-(tert-butylamino)-1-hydroxyethylidene]amino}-4,7-bis(dimethylamino)-5,10,12,12a-tetrahydroxy-1,3,11-trioxo-1,2,3,4,4a,5,5a,6,11,12a-decahydrotetracene-2-carboximidic acid (1)
(13-{[5-(acetyloxy)-3,4-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-1,6,6,11,15-pentamethyl-14-(6-methylhept-5-en-2-yl)-5-[(3,4,5-trihydroxyoxan-2-yl)oxy]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-en-9-yl)oxidanesulfonic acid (1)
(13R)-5-(3,4-dihydroxyphenyl)-6,9,17,19,21-pentahydroxy-13-(4-hydroxyphenyl)-4,12,14-trioxapentacyclo[11.7.1.0²,¹¹.0³,⁸.0¹⁵,²⁰]henicosa-2(11),3(8),5,9,15,17,19-heptaen-7-one (1)
(15Z)-Octadec-15-en-9,11,13-triynoic acid (1)
(1R)-1,4-bis({[(2E)-3-(3,4-dihydroxyphenyl)prop-2-enoyl]oxy})-3-hydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1R,16Z,24E,26E,28Z)-1,18,26,27-tetrahydroxy-19,30-dimethoxy-12-[1-(3-methoxy-4-oxocyclohexyl)propan-2-yl]-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1R,2R,3R,11S,12S,14R,26R)-5,6',7',12-tetrahydroxy-6-methoxy-7,21,30-trimethyl-27-oxo-3',4'-dihydro-2'H-17,19,28-trioxa-24-thia-13,30-diazaspiro[heptacyclo[12.9.6.1³,¹¹.0²,¹³.0⁴,⁹.0¹⁵,²³.0¹⁶,²⁰]triacontane-26,1'-isoquinoline]-4(9),5,7,15(23),16(20),21-hexaen-22-yl acetate (1)
(1R,2S,3R,4R,5S,6R,7S)-1,3,4,5,7,8,9,10,10-Nonachlorotricyclo[5.2.1.0²,⁶]dec-8-ene (1)
(1R,6S,12R,15S)-5,5-Dimethyl-11,13-dioxatetracyclo[7.5.1.0¹,⁶.0¹²,¹⁵]pentadec-8-ene (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-hydroxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-23,25-dimethoxy-13,19,21,27-tetramethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1R,9S,18Z,24R)-12-[1-(4-chloro-3-methoxycyclohexyl)prop-1-en-2-yl]-17-ethyl-1,14-dihydroxy-13-(hydroxymethyl)-23,25-dimethoxy-19,21,27-trimethyl-11,28-dioxa-4-azatricyclo[22.3.1.0⁴,⁹]octacos-18-ene-2,3,10,16-tetrone (1)
(1S)-1,3,4-trihydroxy-5-(sulfooxy)cyclohexane-1-carboxylic acid (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-3-methoxycyclohexyl]propan-2-yl}-15-(hydroxymethyl)-19,30-dimethoxy-17,21,23,29,35-pentamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,16Z,24E,26E,28Z)-1,18-dihydroxy-12-{1-[4-(2-hydroxyethoxy)-5-methoxy-2-oxocyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0⁴,⁹]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(1S,2R,10S,11S,14R,15R)-2,15-Dimethyl-14-[(2R)-6-methylheptan-2-yl]tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadec-7-ene (1)
(1S,2S,10S,11S,15R)-14-(5,6-dimethylheptan-2-yl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,17-diol (1)
(1S,2S,5R,7R,10S,11S,14R,15S,17S)-14-[(1R)-1,2-Dihydroxyethyl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14,17-triol (1)
(1S,2S,5S,10R,11S,14R,15R)-14-[(2R,5R)-5-Ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-ol (1)
(1S,2S,7S,10R,15R)-2,15-dimethyl-14-(1,4,6-trihydroxy-6-methylheptan-2-yl)tetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,9,16-triol (1)
(1S,5R,13R,17S)-15-[(1S,3S,5R,13R)-10,14-Dimethoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,14,16-pentaen-3-yl]-17-hydroxy-10-methoxy-4-methyl-12-oxa-4-azapentacyclo[9.6.1.0¹,¹³.0⁵,¹⁷.0⁷,¹⁸]octadeca-7(18),8,10,15-tetraen-14-one (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

First Public Date

2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (11)
Methylation profiling by array (5)
RNA-seq of coding RNA (5)
Human - Single-cell sequencing (1)
Ribo-seq (1)
Other (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (159)
2022 (146)
2024 (138)
2021 (132)
2023 (128)
2020 (107)
2018 (70)
2019 (57)
2017 (48)
2016 (47)
2014 (47)
2013 (35)
2015 (33)
2026 (24)
2012 (23)
2011 (21)
2010 (20)
2008 (6)
2009 (5)
2007 (4)
2006 (1)
2005 (1)
2000 (1)
1997 (1)

Lab affiliation

Emory University (2)
All India Institute of Medical Sciences, New Delhi, India (1)
Associate Professor and Group Leader Indian Institute of Science Bangalore, India (1)
Associate Professor, Biosciences and Bioengineering Department, IIT Bombay (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 USA (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Group Leader, Vector Borne Diseases International Centre for Genetic Engineering and Biotechnology Aruna Asaf Ali Marg 110067 New Delhi, India (1)
KIIT Deemed to be University (1)
Professor, Department of Biological Sciences, National University of Singapore (1)
Professor, Department of Plant Pathology, UAS, Dharwad, Karnataka, India (1)
Reserch Scientist, Institute of Bioinformatics, Bangalore (1)
USDA-ARS Crop Protection and Management Research Unit Tifton, GA 31794 (1)
UT Health San Antonio (1)

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Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers

Nayak2015 - Blood Coagulation Network - Predicting the Effects of Various Therapies on Biomarkers Note: The SBML model is generated from SimBiology. The SimBiology (.sbproj) file is available for download from the curation tab. This model is des...

2024-09-02 | BIOMD0000000611 | BioModels

Identification of full length, splicing and cleavage products of SufB protein of SUF-complex of Mycobacterium tuberculosis

SufB, an Fe-S cluster assembly protein is critical for mycobacterial survival and virulence; but as a protein still at its nascent stage. SufB is interrupted by an intein sequence, which excises itself out from the full length protein post-translationally. Intein splicing is crucial for the activati...

ORGANISM(S): Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis

2022-02-15 | PXD015199 | Pride

A novel design for porphyrin based D-s-A systems as molecular rectifiers.

Not available

S-EPMC5964962 | biostudies-literature

Catechin and curcumin interact with S protein of SARS-CoV2 and ACE2 of human cell membrane: insights from computational studies.

Not available

S-EPMC7820253 | biostudies-literature

Sinefungin, a natural nucleoside analog of S-adenosyl methionine, impairs the pathogenicity of Candida albicans.

Not available

S-EPMC11391927 | biostudies-literature

Analysis of the transmembrane domain of influenza virus neuraminidase, a type II transmembrane glycoprotein, for apical sorting and raft association.

Not available

S-EPMC112163 | biostudies-literature

Transcriptomic analysis of s-methoprene resistance in the lesser grain borer, Rhyzopertha dominica, and evaluation of piperonyl butoxide as a resistance breaker.

Not available

S-EPMC7819154 | biostudies-literature

Not all 5'-deoxyadenosines are created equal: Tracing the provenance of 5'-deoxyadenosine formed by the radical S-adenosyl-L-methionine enzyme 7-carboxy-7-deazaguanine synthase.

Not available

S-EPMC11994313 | biostudies-literature

Galectin-1 is a new fibrosis protein in type 1 and type 2 diabetes.

Not available

S-EPMC6355075 | biostudies-literature

EMT alterations in the solute carrier landscape uncover SLC22A10/A15 imposed vulnerabilities in pancreatic cancer

The involvement of membrane-bound solute carriers (SLCs) in neoplastic transdifferentiation processes is poorly defined. Here, we examined changes in the SLC landscape during epithelial-mesenchymal transition (EMT) of pancreatic cancer cells. We show that two SLCs from the organic anion...

2021-10-15 | MTBLS1925 | MetaboLights

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