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Unknown
(10896)
Transcriptomics
(1147)
Genomics
(912)
Proteomics
(212)
Metabolomics
(60)
Other
(35)
Methylation profiling
(10)
Models
(4)
Clinical
(3)
Genomic
(2)
Microarray
(1)
Organisms
Homo sapiens
(950)
Mus musculus
(229)
Arabidopsis thaliana
(63)
Rattus norvegicus
(21)
Oryza sativa
(16)
Danio rerio
(12)
Drosophila melanogaster
(12)
Zea mays
(9)
Actinobacillus pleuropneumoniae
(7)
Glycine max
(7)
Bos taurus
(7)
Trypanosoma brucei
(6)
Solanum lycopersicum
(6)
Caenorhabditis elegans
(6)
Medicago truncatula
(6)
Thermotoga maritima MSB8
(5)
Oryza sativa Japonica Group
(5)
Triticum aestivum
(5)
Saccharomyces cerevisiae
(5)
Populus tremula x Populus alba
(4)
Clostridium botulinum
(3)
Buchnera aphidicola
(3)
Bacillus subtilis
(3)
Solanum tuberosum
(3)
Meleagris gallopavo
(2)
Neisseria gonorrhoeae
(2)
Acyrthosiphon pisum
(2)
Acidithiobacillus ferrooxidans ATCC 23270
(2)
Bacillus subtilis subsp. subtilis str. 168
(2)
Streptomyces coelicolor A3(2)
(2)
Organisms
Homo sapiens
(252)
Mus musculus
(55)
Nicotiana benthamiana
(12)
Nitrospina gracilis Nb-211
(11)
Oryza sativa
(10)
prokaryotic metagenome
(9)
Drosophila melanogaster
(7)
Arabidopsis thaliana
(5)
Danio rerio
(4)
Rattus norvegicus
(4)
Plasmodium vivax
(4)
Bos taurus
(4)
Rosa rugosa
(3)
Micromonas pusilla CCMP1545
(2)
Nitrospira marina
(2)
Nitrobacter winogradskyi
(2)
Caudoviricetes
(2)
Triticum aestivum
(2)
Bombyx mori
(2)
Sulfitobacter noctilucae
(1)
Nitrobacter winogradskyi Nb-255
(1)
Staphylococcus aureus S1475
(1)
Massilia sp. MB5
(1)
Leucobacter tenebrionis
(1)
Candidatus Schneideria nysicola
(1)
Panthera tigris amoyensis
(1)
Nitrospina gracilis
(1)
Acidovorax radicis N35v
(1)
Acidovorax radicis N35
(1)
Acinetobacter venetianus RAG-1 = CIP 110063
(1)
Repository
biostudies-arrayexpress
(981)
ENA
(565)
geo
(313)
EGA
(220)
pride
(145)
MassIVE
(78)
MetaboLights
(33)
GNPS
(26)
jPOST
(8)
iProX
(5)
BioModels
(2)
Cell Collective
(2)
dbGaP
(2)
PAXDB
(2)
ExpressionAtlas
(1)
EVA
(1)
MetabolomicsWorkbench
(1)
NODE
(1)
PanoramaPublic
(1)
Tissue
Cell culture
(27)
Blood plasma
(9)
Brain
(7)
Neuroblastoma cell line
(6)
Embryo
(5)
Kidney
(5)
Blood
(4)
Blood serum
(4)
Egg
(4)
Embryonic stem cell
(4)
Epithelial cell
(4)
Fibroblast
(4)
Liver
(4)
Permanent cell line cell
(4)
Early embryonic cell
(3)
HeLa cell
(3)
T cell
(3)
B cell
(2)
Blood cell
(2)
Bone marrow
(2)
Lung
(2)
Malignant cell
(2)
Nerve
(2)
Neuroblastoma cell
(2)
Plant cell
(2)
Schwann cell
(2)
Skin
(2)
Spleen
(2)
Bone marrow
(1)
Neuroblastoma
(1)
Disease
Neuroblastoma
(36)
Disease free
(3)
Rheumatoid arthritis
(2)
Normal
(2)
Acute leukemia
(2)
Colon cancer
(2)
Type 2 diabetes mellitus
(2)
Neuroendocrine tumor
(1)
Septic peritonitis
(1)
Mouse neuroblastoma
(1)
Low-stage neuroblastoma
(1)
Down syndrome, acute megakaryoblastic leukaemia
(1)
Chondroblastoma
(1)
Neuroblastoma-undifferentiated
(1)
Mock-inoculated
(1)
Follicular lymphoma
(1)
Hereditary pheochromocytoma
(1)
Ganglioneuroblastoma
(1)
Neuroblastoma
(1)
Porphyria NOS
(1)
Colonic adenocarcinoma
(1)
Reference
(1)
Acute promyelocytic leukemia
(1)
Carcinoma
(1)
Bronchitis
(1)
Colon cancer
(1)
Carcinoma
(1)
Cancer
(1)
Acute myeloid leukemia
(1)
Brain glioblastoma multiforme
(1)
Technology Type
Mass Spectrometry
(146)
Shotgun proteomics
(74)
Bottom-up proteomics
(27)
Affinity purification coupled with mass spectrometry proteomics
(20)
Mass spectrometry
(16)
Data-dependent acquisition
(14)
Mass spectrometry assay
(9)
Data-independent acquisition
(9)
NMR spectroscopy
(6)
Chemical cross-linking coupled with mass spectrometry proteomics
(6)
HDMSE
(6)
SWATH MS
(6)
Illumina HiSeq 2000
(4)
All-ion fragmentation
(3)
Gel-based experiment
(3)
NMR spectroscopy assay
(2)
Affinity proteomics
(2)
SomaScan affinity proteomics
(2)
Illumina HiSeq 4000 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA), NextSeq 500 (ILLUMINA)
(1)
Illumina HiSeq 4000, ILLUMINA
(1)
Illumina
(1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000
(1)
Complete Genomics
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(1)
ESI
(1)
DiaPASEF
(1)
Immunopeptidomics
(1)
PAcIFIC
(1)
SRM/MRM
(1)
Instrument Platform
Illumina NovaSeq 6000
(21)
NextSeq 500
(18)
Illumina HiSeq 2500
(10)
Illumina HiSeq 2000
(9)
Illumina Genome Analyzer IIx
(6)
Scanning hardware
(6)
Illumina HiSeq 1500
(4)
Illumina HiSeq 4000
(4)
NextSeq 550
(3)
Scanning of was performed on an Axon 4000B scanner
(2)
GenePix 4000A [Axon Instruments]
(2)
G2565AA DNA microarray scanner [Agilent]
(2)
Axon- GenePix4000B
(2)
G2565BA DNA microarray scanner [Agilent]
(2)
ScanArray Express HT
(2)
NextSeq 2000
(2)
HiSeq X Ten
(2)
Illumina MiSeq
(2)
Aspara® Smart Grower Hydroponic
(1)
G2565BA DNA microarray scanner
(1)
ViiA 7 Real-Time PCR System (Life Technologies)
(1)
GenePix Professional 4200A [Axon Instruments]
(1)
G2505A DNA microarray scanner [Agilent]
(1)
ScanArray Express HT [PerkinElmer]
(1)
GenePix 4000B [Axon Instruments]
(1)
NextSeq 1000
(1)
Affymetrix
(1)
Illumina NovaSeq X
(1)
Ion Torrent Proton
(1)
TruSeq mRNA Sample Prep kit v2 (Illumina)
(1)
Publication Date
2013
(136)
2014
(126)
2012
(113)
2010
(107)
2016
(106)
2015
(102)
2018
(82)
2024
(79)
2011
(79)
2025
(73)
2026
(72)
2022
(71)
2023
(69)
2008
(68)
2021
(54)
2009
(50)
2007
(46)
2020
(43)
2019
(37)
2017
(30)
2006
(25)
2005
(9)
2004
(6)
2003
(2)
UNIPROT ID/AC
14310_ARATH
(2)
14332_ARATH
(2)
14333_ARATH
(2)
14334_ARATH
(2)
14336_ARATH
(2)
14337_ARATH
(2)
14338_ARATH
(2)
14339_ARATH
(2)
2AAA_ARATH
(2)
2AAG_ARATH
(2)
3702.AT1G07930.1
(2)
3702.AT1G33140.1
(2)
3702.AT1G34030.1
(2)
3702.AT2G21385.4
(2)
3702.AT2G28740.1
(2)
3702.AT3G29185.2
(2)
3702.AT3G53730.1
(2)
3702.AT3G53750.1
(2)
3702.AT4G09800.1
(2)
3702.AT5G10330.1
(2)
3702.AT5G19780.1
(2)
3702.AT5G36790.1
(2)
3702.AT5G59970.1
(2)
3702.AT5G60390.1
(2)
3702.AT5G62700.1
(2)
3702.ATCG01240.1
(2)
3702.ATCG01310.1
(2)
3HID1_ARATH
(2)
4CLLA_ARATH
(2)
5FCLL_ARATH
(2)
CHEBI ID
CHEBI:15428
(10)
CHEBI:15354
(8)
CHEBI:32816
(7)
CHEBI:15611
(6)
CHEBI:16977
(6)
CHEBI:15741
(6)
CHEBI:15891
(6)
CHEBI:16449
(6)
CHEBI:15422
(6)
CHEBI:16919
(6)
CHEBI:18132
(5)
CHEBI:16856
(5)
CHEBI:30751
(5)
CHEBI:18050
(5)
CHEBI:422
(5)
CHEBI:16015
(5)
CHEBI:15366
(5)
CHEBI:15603
(5)
CHEBI:17368
(5)
CHEBI:30769
(5)
CHEBI:18066
(4)
CHEBI:17822
(4)
CHEBI:26271
(4)
CHEBI:18186
(4)
CHEBI:26986
(4)
CHEBI:16870
(4)
CHEBI:30794
(4)
CHEBI:17754
(4)
CHEBI:17268
(4)
CHEBI:6650
(4)
Metabolite Name
Taurine
(6)
Glycine
(5)
Glycine
(5)
Creatine
(5)
Sarcosine
(4)
Choline
(4)
Pyruvate
(4)
Valine
(4)
Acetic acid
(4)
Serine
(4)
Alanine
(4)
L-Valine
(4)
2-hydroxybutyrate
(3)
L-Lactic acid
(3)
Acetate
(3)
D-Glucose
(3)
Anserine
(3)
Leucine
(3)
Aspartate
(3)
Betaine
(3)
Succinate
(3)
Adenosine
(3)
Formic acid
(3)
L-Alanine
(3)
Glycerol
(3)
L-Threonine
(3)
L-Histidine
(3)
L-Glutamic acid
(3)
Citric acid
(3)
Oxypurinol
(3)
First Public Date
2024
(82)
2025
(76)
2026
(68)
2014
(68)
2021
(42)
2022
(39)
2023
(36)
2020
(33)
2016
(23)
2017
(22)
2018
(21)
2019
(20)
2015
(17)
2013
(17)
2012
(1)
Modelling Approach
Protein-protein interaction network
(1)
Other
(1)
Study status
Completed
(2)
Recruiting
(1)
Lab affiliation
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(3)
Biology Department University of Massachusetts Boston Boston, USA
(2)
Biology Department, University of Massachusetts Boston, USA
(2)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain
(2)
Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne
(2)
Department of Chemistry & Chemical Biology, Northeastern University
(2)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
(2)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany
(2)
King's College London, Chemistry Department, 7 Trinity Street, London, SE1 1DB, UK
(2)
Professor Institutt for klinisk og molekylær medisin Norges teknisk-naturvitenskapelige universitet Erling Skjalgssons g 1, Laboratoriesenteret * 231.05.036 Trondheim 7030 Norway
(2)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands, 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, The Netherlands
(1)
1Cancer Research Program, Hospital del Mar Research Institute, Doctor Aiguader 88, Barcelona 08003, Spain. Centro de Investigación Biomédica en Red Cáncer (CIBERONC), Madrid, Spain.
(1)
Alexander Schmidt, Biozentrum, University of Basel Spitalstrasse 41, CH-4056 Basel, Switzerland Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch
(1)
Alexander Schmidt, Biozentrum, University of Basel, Spitalstrasse 41, CH-4056 Basel, Switzerland, Tel. +41 61 207 0927, https://www.biozentrum.unibas.ch
(1)
Associate Professor, Department of Clinical Biochemistry, Odense University Hospital and Department of Clinical Research, University of Southern Denmark
(1)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
(1)
Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing China
(1)
Blizard Institute, Centre for Genomics and Child Health, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, E1 2AT, UK
(1)
CNIC
(1)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK
(1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS)
(1)
Cell Technologies Center, Institute of Cytology RAS,St. Petersburg, Russia
(1)
Cell and Chemical Biology Leiden University Medical Center
(1)
Cell and Chemical Biology Leiden University Medical Center Leiden The Netherlands
(1)
Cell and Chemical Biology Leiden University Medical Center The Netherlands
(1)
Centre for Clinical Proteomics, Department of Clinical Biochemistry and Pharmacology, Odense University Hospital, Denmark
(1)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK
(1)
Charité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Institute of Pharmacology, 10115 Berlin, Germany
(1)
College of Animal Sciences and Technology, Huazhong Agricultural University, China
(1)
Tags
pathogen
(10)
xref:PubMed:40664206
(6)
xref:PubMed:34772733
(5)
xref:PubMed:32337068
(5)
pathogen:protozoan
(5)
xref:PubMed:39174852
(4)
xref:PubMed:38702304
(4)
xref:PubMed:41012597
(4)
xref:PubMed:26997247
(3)
xref:PubMed:39495206
(3)
xref:PubMed:37350973
(3)
xref:PubMed:41630015
(3)
xref:PubMed:23659652
(3)
pathogen:bacterium
(3)
xref:PubMed:34635821
(2)
xref:PubMed:34579723
(2)
xref:PubMed:35197448
(2)
xref:PubMed:39133652
(2)
xref:PubMed:28915608
(2)
xref:PubMed:37188782
(2)
xref:PubMed:38180812
(2)
xref:PubMed:39841599
(2)
xref:PubMed:35303940
(2)
xref:PubMed:33033295
(2)
xref:PubMed:25122614
(2)
xref:PubMed:36130928
(2)
xref:PubMed:36052716
(2)
xref:PubMed:39119816
(2)
xref:PubMed:25340333
(2)
xref:PubMed:37289021
(2)
Keyword
BRD3
(1)
GSK525762
(1)
NUT Midline Carcinoma
(1)
MYCN-amplified Solid Tumor
(1)
BRD4
(1)
BET inhibitor
(1)
Bromodomains
(1)
NMC
(1)
Colorectal C ancer
(1)
Neuroblastoma
(1)
Oncology
(1)
IsPrivate
False
(2)
Submitter Keywords
Machine Learning Model
(1)
Classification
protozoa
(5)
bacteria
(3)
viruses
(2)
Modification
Not available
(2)
-17.026549
(1)
-18.010565
(1)
15.994915
(1)
2x(15)N labeled L-lysine
(1)
4x(15)N labeled L-arginine
(1)
4x(2)H labeled dimethylated residue
(1)
57.021464
(1)
58.005479
(1)
79.966331
(1)
Study type
Transcription profiling by array
(627)
RNA-seq of coding RNA
(103)
Methylation profiling by array
(41)
ChIP-seq
(38)
Comparative genomic hybridization by array
(35)
RNA-seq of non coding RNA
(16)
Methylation profiling by high throughput sequencing
(14)
ChIP-chip by tiling array
(11)
Unknown experiment type
(10)
Genotyping by array
(9)
Other
(9)
RNA-seq of coding RNA from single cells
(9)
ChIP-chip by array
(8)
Transcription profiling by tiling array
(7)
RNA-seq of total RNA
(6)
RNAi profiling by array
(4)
DNA-seq
(4)
Transcription profiling by SAGE
(3)
Human - High-throughput sequencing
(3)
Cell line - High-throughput sequencing
(3)
MicroRNA profiling by array
(3)
Transcription profiling by array of Physcomitrella patens Reute development
(1)
MNase-seq
(1)
RIP-chip by array
(1)
Plant - High-throughput sequencing
(1)
Cell line - One-color microarray
(1)
Human - One-color microarray
(1)
Animal - High-throughput sequencing
(1)
CLIP-seq
(1)
MBD-seq
(1)
Release Date
2022
(1309)
2023
(1201)
2025
(1129)
2021
(1120)
2024
(1082)
2020
(875)
2019
(676)
2018
(630)
2016
(543)
2015
(506)
2017
(504)
2014
(416)
2013
(350)
2012
(328)
2010
(245)
2011
(230)
2026
(163)
2009
(148)
2008
(139)
2007
(99)
2006
(63)
2005
(30)
2004
(24)
2003
(18)
2002
(13)
2001
(13)
2000
(9)
1998
(7)
1999
(5)
1997
(2)
Location
Australia
(2)
South Korea
(1)
Spain
(1)
Canada
(1)
Netherlands
(1)
United States
(1)
United Kingdom
(1)
France
(1)
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Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-2_2
PRJNA1095943
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-3_2
PRJNA1095944
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211F-2
PRJNA1095946
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211F-3
PRJNA1095947
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211F-1
PRJNA1095945
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-2_1
PRJNA1095940
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-3_1
PRJNA1095941
|
ENA
Cite
Limosilactobacillus fermentum NB-22
Limosilactobacillus fermentum NB-22 Genome sequencing and assembly
PRJNA223167
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-1 _2
PRJNA1095942
|
ENA
Cite
Nitrospina gracilis Nb-211
Nitrospina gracilis Nb-211 transcriptome - 211N-1 _1
PRJNA1095939
|
ENA
Cite
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